SMTL ID : 8dvx.2 (3 other biounits)

Structure of acetylated Pig somatic Cytochrome c (Aly39) at 1.5A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 25 residues within 4Å: Chain A: K.13, C.14, C.17, H.18, T.28, G.29, P.30, L.35, T.40, G.41, F.46, Y.48, T.49, N.52, W.59, L.64, Y.67, L.68, T.78, K.79, M.80, I.81, F.82, L.94, L.98 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:T.28, A:L.35, A:F.46, A:W.59, A:L.64, A:Y.67, A:L.68, A:M.80, A:F.82, A:L.94, A:L.98 Hydrogen bonds: A:G.41, A:Y.48, A:T.49, A:N.52, A:N.52, A:K.79 Water bridges: A:Q.42, A:A.43, A:T.78 Metal complexes: A:H.18

4 x FC6: HEXACYANOFERRATE(3-)(Non-covalent)

FC6.2: 4 residues within 4Å: Chain A: K.87, K.88, G.89, E.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.88, A:G.89, A:E.90 FC6.3: 4 residues within 4Å: Chain A: K.13, K.86, K.87, E.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.13, A:K.86, A:K.87 FC6.4: 3 residues within 4Å: Chain A: K.7, K.8, V.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.7 FC6.5: 2 residues within 4Å: Chain A: K.99, K.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.100 Water bridges: A:K.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morse, P.T. et al., Cytochrome c lysine acetylation regulates cellular respiration and cell death in ischemic skeletal muscle. Nat Commun (2023)

Release Date

2023-07-19

Peptides

Cytochrome c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome c

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