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SMTL ID : 8e0s.1
DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with DAHP Oxime in unbound:(bound)2:unbound conformations
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.65 Å
Oligo State
homo-tetramer
Ligands
1 x
GLC
:
alpha-D-glucopyranose
(Non-covalent)
GLC.1:
5 residues within 4Å:
Chain A:
S.225
,
G.226
,
N.227
,
G.228
Chain B:
R.10
6
PLIP interactions
:
5 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:S.225
,
A:S.225
,
A:S.225
,
A:G.228
,
B:R.10
Water bridges:
A:D.229
2 x
52L
:
DAHP Oxime
(Non-covalent)
52L.2:
11 residues within 4Å:
Chain B:
C.62
,
R.93
,
Y.95
,
K.98
,
P.99
,
R.100
,
T.101
,
E.144
,
K.187
,
H.269
,
D.327
21
PLIP interactions
:
21 interactions with chain B
Hydrophobic interactions:
B:P.99
Hydrogen bonds:
B:K.98
,
B:P.99
,
B:T.101
,
B:T.101
,
B:T.101
,
B:T.101
,
B:D.327
,
B:D.327
Water bridges:
B:R.93
,
B:R.93
,
B:R.93
,
B:T.102
,
B:E.144
,
B:K.187
,
B:R.235
Salt bridges:
B:R.93
,
B:K.98
,
B:R.100
,
B:K.187
,
B:H.269
52L.3:
11 residues within 4Å:
Chain C:
C.62
,
R.93
,
Y.95
,
K.98
,
P.99
,
R.100
,
T.101
,
E.144
,
K.187
,
H.269
,
D.327
18
PLIP interactions
:
18 interactions with chain C
Hydrophobic interactions:
C:P.99
Hydrogen bonds:
C:K.98
,
C:P.99
,
C:T.101
,
C:T.101
,
C:D.327
,
C:D.327
Water bridges:
C:R.93
,
C:K.98
,
C:T.102
,
C:E.144
,
C:K.187
,
C:K.187
Salt bridges:
C:R.93
,
C:K.98
,
C:R.100
,
C:K.187
,
C:H.269
1 x
BGC
:
beta-D-glucopyranose
(Non-covalent)
BGC.4:
5 residues within 4Å:
Chain D:
E.72
,
R.76
,
L.306
,
Y.321
,
W.332
5
PLIP interactions
:
5 interactions with chain D
Hydrogen bonds:
D:E.72
,
D:R.76
Water bridges:
D:W.332
,
D:E.333
Salt bridges:
D:R.76
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Balachandran, N. et al., Role of Half-of-Sites Reactivity and Inter-Subunit Communications in DAHP Synthase Catalysis and Regulation. Biochemistry (2022)
Release Date
2022-10-12
Peptides
Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
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ClustalW
PNG
Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive
Related Entries With Identical Sequence
5cks.1
|
7rud.1
|
7rue.1
|
8e0t.1
|
8e0u.1
|
8e0v.1
|
8e0x.1
|
8e0y.1
|
8e0z.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme