SMTL ID : 8e3n.1

Crystal structure of pregnane X receptor ligand binding domain complexed with rifamycin S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x VA0: Rifamycin S(Non-covalent)

VA0.1: 19 residues within 4Å: Chain A: L.88, S.90, L.91, V.93, L.122, M.125, S.129, F.133, F.163, C.166, Q.167, F.170, W.181, Y.188, H.289, R.292, L.293, I.296, F.302 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.88, A:L.91, A:V.93, A:L.122, A:F.170, A:F.170, A:F.170, A:W.181, A:W.181, A:W.181, A:Y.188, A:Y.188, A:R.292, A:I.296, A:F.302 Hydrogen bonds: A:S.90, A:S.129, A:Q.167, A:Q.167, A:R.292, A:R.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, W. et al., Structure-guided approach to modulate small molecule binding to a promiscuous ligand-activated protein. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-03-15

Peptides

Nuclear receptor subfamily 1 group I member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group I member 2

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