SMTL ID : 9beq.1

Crystal structure of pregnane X receptor ligand binding domain complexed with AP1867

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x AP1: {3-[3-(3,4-DIMETHOXY-PHENYL)-1-(1-{1-[2-(3,4,5-TRIMETHOXY-PHENYL)-BUTYRYL]-PIPERIDIN-2YL}-VINYLOXY)-PROPYL]-PHENOXY}-ACETIC ACID(Non-covalent)

AP1.1: 22 residues within 4Å: Chain A: S.90, L.91, V.93, L.121, L.122, H.124, M.125, A.126, M.128, S.129, F.133, F.163, Q.167, F.170, W.181, Y.188, E.203, M.205, H.289, R.292, L.293, F.302 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.91, A:V.93, A:F.133, A:F.163, A:F.170, A:F.170, A:F.170, A:W.181, A:W.181, A:W.181, A:Y.188, A:M.205 Hydrogen bonds: A:S.90, A:L.91, A:Q.167, A:E.203, A:R.292, A:R.292 Salt bridges: A:H.289, A:R.292 pi-Stacking: A:Y.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, A.D. et al., PROTAC-mediated activation, rather than degradation, of a nuclear receptor reveals complex ligand-receptor interaction network. Structure (2024)

Release Date

2024-10-09

Peptides

Nuclear receptor subfamily 1 group I member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group I member 2

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