SMTL ID : 8e98.1

D-cycloserine and glutamate bound Human GluN1a-GluN2C NMDA receptor in nanodisc - intact conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: N.368, T.370 Ligands: NAG.4 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 3 residues within 4Å: Chain B: K.513, P.715, N.716 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 4 residues within 4Å: Chain C: N.28, N.61, A.62, T.63 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.28

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: T.335, G.336, R.337, N.350, N.368 Ligands: NAG-NAG-BMA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.335, A:R.337, A:N.350 NAG.5: 3 residues within 4Å: Chain A: P.767, W.768, N.771 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.768 Hydrogen bonds: A:N.771 NAG.6: 1 residues within 4Å: Chain A: N.471 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.471 NAG.7: 1 residues within 4Å: Chain B: N.368 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.368 NAG.8: 3 residues within 4Å: Chain C: N.368, G.369, T.370 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.368, C:G.369, C:T.370 NAG.9: 1 residues within 4Å: Chain C: N.771 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain C: I.272, N.350 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.272 NAG.11: 3 residues within 4Å: Chain C: N.276, A.279, V.334 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain D: R.364, H.365, N.368 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural insights into assembly and function of GluN1-2C, GluN1-2A-2C, and GluN1-2D NMDARs. Mol.Cell (2022)

Release Date

2022-12-07

Peptides

Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2C: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2C

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