SMTL ID : 8ed1.1

Bovine Fab 5C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: S.8, D.86, S.103, G.104, T.106 Chain B: G.42 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.43, A:G.104, A:T.106 GOL.3: 2 residues within 4Å: Chain B: K.106, Y.114 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain B: V.126, R.130, C.137, S.138, W.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.130, B:C.137

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: S.95, S.96, S.97 Chain B: T.102, Y.152 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.95, A:S.95, A:S.96, B:T.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, R. et al., The smallest functional antibody fragment: Ultralong CDR H3 antibody knob regions potently neutralize SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-09-20

Peptides

5C1 Fab light chain: A
5C1 Fab heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

5C1 Fab light chain

5C1 Fab heavy chain

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