SMTL ID : 8edf.1

Bovine Fab SKD in complex with Sars COV-2 receptor binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 8 residues within 4Å: Chain C: F.5, G.6, F.9, N.10, V.34, L.35, S.38, F.41 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.9, C:V.34 Hydrogen bonds: C:N.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, R. et al., The smallest functional antibody fragment: Ultralong CDR H3 antibody knob regions potently neutralize SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-09-20

Peptides

SKD Fab Light chain: A
SKD Fab heavy chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

SKD Fab Light chain

SKD Fab heavy chain

Spike protein S1

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