SMTL ID : 8egm.2 (1 other biounit)

Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with compound AZ13644908

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x WIU: (2R)-2-({4-[(5-tert-butyl-1-methyl-1H-pyrazol-3-yl)amino]-1H-pyrazolo[3,4-d]pyrimidin-6-yl}amino)-2-phenylethyl (2-aminoethyl)carbamate(Non-covalent)

WIU.1: 14 residues within 4Å: Chain A: H.118, G.119, T.122, T.183, N.184, I.185, D.186, C.220, D.223, V.225, Y.240, H.282, L.285, N.286 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.118, A:H.282, A:L.285, A:L.285 Hydrogen bonds: A:T.183, A:N.184, A:D.186, A:D.186, A:D.223, A:N.286, A:N.286 Water bridges: A:T.183 pi-Cation interactions: A:H.282 WIU.3: 14 residues within 4Å: Chain B: H.118, G.119, T.122, T.183, N.184, I.185, D.186, C.220, D.223, V.225, Y.240, H.282, L.285, N.286 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.118, B:H.282, B:L.285 Hydrogen bonds: B:T.183, B:N.184, B:D.186, B:D.223, B:Y.240, B:N.286, B:N.286 Water bridges: B:T.183 pi-Cation interactions: B:H.282 WIU.5: 15 residues within 4Å: Chain C: H.118, G.119, T.122, T.183, N.184, I.185, D.186, C.220, D.223, V.225, Y.240, H.282, L.285, N.286 Ligands: SO4.6 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:H.118, C:H.282, C:L.285, C:L.285 Hydrogen bonds: C:T.183, C:N.184, C:D.186, C:D.186, C:D.223, C:N.286, C:N.286 Water bridges: C:T.183 pi-Cation interactions: C:H.282 WIU.7: 15 residues within 4Å: Chain D: H.118, G.119, T.122, T.183, N.184, I.185, D.186, C.220, D.223, V.225, Y.240, H.282, L.285, N.286 Ligands: SO4.8 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:H.118, D:H.282, D:L.285 Hydrogen bonds: D:T.183, D:N.184, D:D.186, D:D.223, D:Y.240, D:N.286, D:N.286 pi-Cation interactions: D:H.282

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: T.117, H.118, G.119, K.120, T.121 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.119, A:K.120, A:T.121, A:T.121 Water bridges: A:H.118, A:G.119, A:K.120, A:K.120, A:T.122 Salt bridges: A:K.120 SO4.4: 5 residues within 4Å: Chain B: T.117, H.118, G.119, K.120, T.121 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.119, B:K.120, B:T.121 Water bridges: B:H.118 Salt bridges: B:K.120 SO4.6: 6 residues within 4Å: Chain C: T.117, H.118, G.119, K.120, T.121 Ligands: WIU.5 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:T.117, C:G.119, C:K.120, C:T.121, C:T.121, C:T.121 Water bridges: C:T.122 Salt bridges: C:K.120 SO4.8: 6 residues within 4Å: Chain D: T.117, H.118, G.119, K.120, T.121 Ligands: WIU.7 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.119, D:K.120, D:T.121 Water bridges: D:T.121, D:T.121, D:T.122 Salt bridges: D:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa. to be published

Release Date

2022-10-05

Peptides

UDP-N-acetylmuramate--L-alanine ligase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
E

UDP-N-acetylmuramate--L-alanine ligase

Related Entries With Identical Sequence