SMTL ID : 8ewa.1

Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with ligand AZ-13644923

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x WYI: (2R)-2-({4-[(5-tert-butyl-1-methyl-1H-pyrazol-3-yl)amino]-1H-pyrazolo[3,4-d]pyrimidin-6-yl}amino)-2-phenylethyl (2R)-2-(aminomethyl)morpholine-4-carboxylate(Non-covalent)

WYI.1: 12 residues within 4Å: Chain A: H.118, G.119, T.122, T.183, N.184, D.186, C.220, Y.240, H.282, L.285, N.286 Ligands: SO4.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.118, A:H.282, A:L.285 Hydrogen bonds: A:T.183, A:N.184, A:D.186, A:Y.240, A:N.286, A:N.286 pi-Cation interactions: A:H.282 WYI.3: 15 residues within 4Å: Chain B: H.118, G.119, T.122, T.183, N.184, I.185, D.186, C.220, D.223, Y.240, L.281, H.282, L.285, N.286 Ligands: SO4.4 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:H.118, B:L.281, B:H.282, B:L.285, B:L.285 Hydrogen bonds: B:T.183, B:N.184, B:D.186, B:N.286, B:N.286 Water bridges: B:D.186, B:A.187, B:A.187, B:A.187 pi-Cation interactions: B:H.282

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.118, G.119, K.120, T.121, T.122 Ligands: WYI.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.119, A:K.120, A:T.121, A:T.121, A:T.122 Water bridges: A:H.118 SO4.4: 6 residues within 4Å: Chain B: H.118, G.119, K.120, T.121, T.122 Ligands: WYI.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.119, B:K.120, B:T.121, B:T.122, B:T.122 Water bridges: B:T.117, B:K.120, B:T.121

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain B: G.21, G.24, R.145, L.146 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with ligand AZ-13644923. to be published

Release Date

2022-11-09

Peptides

UDP-N-acetylmuramate--L-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-N-acetylmuramate--L-alanine ligase

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