SMTL ID : 8ei5.3 (3 other biounits)

Crystal structure of the WWP2 HECT domain in complex with H301, a Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Y.98, T.310, T.348, N.351 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.310, A:T.348

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.98, T.138, S.157 Ligands: ZN.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.314 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.5: 8 residues within 4Å: Chain A: C.177, G.178, L.179, E.180 Chain B: C.8, A.11, A.12, C.15 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:E.180, B:A.11, B:A.12 Hydrogen bonds: A:E.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokareva, O.S. et al., Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun (2023)

Release Date

2023-10-25

Peptides

NEDD4-like E3 ubiquitin-protein ligase WWP2: A
H301: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

NEDD4-like E3 ubiquitin-protein ligase WWP2

H301

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