SMTL ID : 8ei7.2 (1 other biounit)

Crystal structure of the WWP2 HECT domain in complex with H304, a Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 5 residues within 4Å: Chain A: H.25, K.27, Y.56, I.58, Y.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.27

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: N.20, Y.49, R.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.52 Water bridges: A:R.52

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: D.237, N.240, L.245 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.237 Water bridges: A:N.240, A:N.240 EDO.4: 5 residues within 4Å: Chain A: S.24, H.25, V.26, D.50, R.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.24, A:S.24 EDO.5: 4 residues within 4Å: Chain A: F.132, L.258, G.262, M.263 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.263 EDO.6: 3 residues within 4Å: Chain A: D.134, L.315, V.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.134, A:L.315

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: T.310, I.324, T.348, N.351 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.310, A:T.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokareva, O.S. et al., Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun (2023)

Release Date

2023-10-25

Peptides

NEDD4-like E3 ubiquitin-protein ligase WWP2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NEDD4-like E3 ubiquitin-protein ligase WWP2

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