SMTL ID : 8ekx.1

Structure of MBP-Mcl-1 in complex with MIK665

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.27, D.29, K.30, W.77, A.78, D.80, R.81, E.126, E.168, P.169, Y.170, F.171, W.245, M.345, W.355, R.359 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.77, A:R.81, A:R.81, A:E.168, A:Y.170, A:R.359

1 x OK5: (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[[2-(2-methoxyphenyl)pyrimidin-4-yl]methoxy]phenyl]propanoic acid(Non-covalent)

OK5.2: 18 residues within 4Å: Chain A: V.427, V.431, H.435, A.438, F.439, G.441, M.442, L.446, L.457, V.460, V.464, F.465, G.473, R.474, T.477, L.478, F.481, F.530 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.427, A:V.431, A:H.435, A:L.457, A:V.460, A:V.464, A:V.464, A:T.477, A:F.481, A:F.481, A:F.481, A:F.530 Hydrogen bonds: A:R.474, A:T.477 Water bridges: A:G.473, A:G.473 Salt bridges: A:R.474 Halogen bonds: A:A.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuda, J. et al., Selective MCL-1 inhibitor ABBV-467 is efficacious in tumor models but is associated with cardiac troponin increases in patients. Commun Med (Lond) (2023)

Release Date

2023-11-08

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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