SMTL ID : 8el0.1

Structure of MBP-Mcl-1 in complex with a macrocyclic compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.27, D.29, K.30, W.77, A.78, D.80, R.81, E.126, E.168, P.169, Y.170, F.171, W.245, M.345, W.355, R.359 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.77, A:R.81, A:R.81, A:Y.170, A:R.359 Water bridges: A:D.80

1 x WLW: (7R,20P)-18-chloro-1-(4-fluorophenyl)-10-{[(2M)-2-(2-methoxyphenyl)pyrimidin-4-yl]methoxy}-19-methyl-15-[2-(4-methylpiperazin-1-yl)ethyl]-7,8,15,16-tetrahydro-14H-17,20-etheno-9,13-(metheno)-6-oxa-2-thia-3,5,15-triazacyclooctadeca[1,2,3-cd]indene-7-carboxylic acid(Non-covalent)

WLW.2: 17 residues within 4Å: Chain A: V.427, V.431, H.435, A.438, F.439, M.442, L.446, V.460, M.461, V.464, F.465, G.473, R.474, T.477, L.478, F.481, F.530 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.427, A:V.431, A:V.460, A:V.464, A:V.464, A:T.477, A:F.481, A:F.481, A:F.481, A:F.530 Hydrogen bonds: A:R.474 Salt bridges: A:R.474 Halogen bonds: A:A.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuda, J. et al., Selective MCL-1 inhibitor ABBV-467 is efficacious in tumor models but is associated with cardiac troponin increases in patients. Commun Med (Lond) (2023)

Release Date

2023-10-04

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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