SMTL ID : 8eni.1

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x WNE: 3-[4-(5-fluoro-4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)butyl]-5-methyl-1,3-benzoxazol-2(3H)-one(Non-covalent)

WNE.1: 29 residues within 4Å: Chain A: S.93, T.94, Q.95, Q.116, G.119, R.120, G.121, R.122, R.125, H.126, W.127, W.136, M.137, S.138, N.179, D.180, K.187, V.188, C.189, G.190, F.191, L.192, G.208, I.209, G.210, N.212, I.224, R.227, A.228 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.127, A:W.127, A:K.187, A:K.187, A:I.224, A:A.228 Hydrogen bonds: A:T.94, A:Q.95, A:Q.116, A:Q.116, A:R.120, A:R.120, A:R.122, A:R.125 Water bridges: A:R.227 pi-Stacking: A:W.127 pi-Cation interactions: A:K.187, A:K.187 WNE.2: 29 residues within 4Å: Chain B: S.93, T.94, Q.95, Q.116, G.119, R.120, G.121, R.122, R.125, H.126, W.127, W.136, M.137, S.138, N.179, D.180, K.187, V.188, C.189, G.190, F.191, L.192, G.208, I.209, G.210, N.212, I.224, R.227, A.228 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:W.127, B:W.127, B:K.187, B:K.187, B:I.224, B:A.228 Hydrogen bonds: B:T.94, B:Q.95, B:Q.116, B:Q.116, B:R.120, B:R.120, B:R.122, B:R.125 Water bridges: B:R.227 pi-Stacking: B:W.127 pi-Cation interactions: B:K.187, B:K.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paparella, A.S. et al., Halogenation of Biotin Protein Ligase Inhibitors Improves Whole Cell Activity against Staphylococcus aureus. ACS Infect Dis (2018)

Release Date

2022-11-30

Peptides

Bifunctional ligase/repressor BirA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional ligase/repressor BirA

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