SMTL ID : 8ent.1 (3 other biounits)

Interleukin-21 signaling complex with IL-21R and IL-2Rg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: I.17, N.54, T.56, H.57 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.17 NAG-NAG.2: 5 residues within 4Å: Chain C: F.12, Y.16, N.18, L.53, W.102 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain C: P.29, N.31, F.54, E.57 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.31, C:N.31 NAG.5: 3 residues within 4Å: Chain C: E.105, N.106, N.122 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:N.122 Hydrogen bonds: C:E.105, C:N.106, C:N.122

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain C: Y.38, S.41, D.42, H.70 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.41, C:S.41, C:H.70 EDO.6: 2 residues within 4Å: Chain C: E.131, D.150 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.131, C:D.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abhiraman, G.C. et al., A structural blueprint for interleukin-21 signal modulation. Cell Rep (2023)

Release Date

2023-06-28

Peptides

Interleukin-21: A
Interleukin-21 receptor: B
Cytokine receptor common subunit gamma: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Interleukin-21

Interleukin-21 receptor

Cytokine receptor common subunit gamma

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