SMTL ID : 8ent.3 (3 other biounits)

Interleukin-21 signaling complex with IL-21R and IL-2Rg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain C: F.12, Y.16, N.18, L.53 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: N.54, T.56, H.57 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.54, B:T.56 NAG.3: 4 residues within 4Å: Chain C: E.105, N.106, N.122, N.123 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:N.122 Hydrogen bonds: C:E.105 NAG.4: 4 residues within 4Å: Chain C: P.29, N.31, F.54, E.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.57

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain C: L.93, K.94, L.95, N.97, L.98 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.94, C:L.95, C:N.97 EDO.6: 2 residues within 4Å: Chain C: E.131, D.150 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abhiraman, G.C. et al., A structural blueprint for interleukin-21 signal modulation. Cell Rep (2023)

Release Date

2023-06-28

Peptides

Interleukin-21: A
Interleukin-21 receptor: B
Cytokine receptor common subunit gamma: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

Interleukin-21

Interleukin-21 receptor

Cytokine receptor common subunit gamma

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