SMTL ID : 8eqm.1

Structure of a dimeric photosystem II complex acclimated to far-red light

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
2 x FE2: FE (II) ION(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
60 x CLA: CHLOROPHYLL A(Non-covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
14 x BCR: BETA-CAROTENE(Non-covalent)
4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Covalent)(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
8 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Covalent)(Non-covalent)
8 x F6C: Chlorophyll F(Non-covalent)
6 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
2 x CL7: CHLOROPHYLL D(Non-covalent)
4 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
2 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Gisriel, C.J. et al., Structure of a dimeric photosystem II complex from a cyanobacterium acclimated to far-red light. J.Biol.Chem. (2022)
Release Date
2022-12-28
Peptides
Photosystem II protein D1: AQ
Photosystem II CP47 reaction center protein: BR
Photosystem II CP43 reaction center protein: CS
Photosystem II D2 protein: DT
Cytochrome b559 subunit alpha: EU
Cytochrome b559 subunit beta: FV
Photosystem II reaction center protein H: GW
Photosystem II reaction center protein I: HX
Photosystem II reaction center protein K: IY
Photosystem II reaction center protein L: JZ
Photosystem II reaction center protein M: K0
Photosystem II manganese-stabilizing polypeptide: L1
Photosystem II reaction center protein T: M2
Photosystem II 12 kDa extrinsic protein: N3
Cytochrome c-550: O4
Photosystem II reaction center X protein: P5
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Q
a
B
B
R
b
C
C
S
c
D
D
T
d
E
E
U
e
F
F
V
f
G
H
W
h
H
I
X
i
I
K
Y
k
J
L
Z
l
K
M
0
m
L
O
1
o
M
T
2
t
N
U
3
u
O
V
4
v
P
X
5
x
Membrane
We predict this structure to be a membrane protein.

Photosystem II protein D1

Toggle Identical (AQ)

Photosystem II CP47 reaction center protein

Toggle Identical (BR)

Photosystem II CP43 reaction center protein

Toggle Identical (CS)

Photosystem II D2 protein

Toggle Identical (DT)

Cytochrome b559 subunit alpha

Toggle Identical (EU)

Cytochrome b559 subunit beta

Toggle Identical (FV)

Photosystem II reaction center protein H

Toggle Identical (GW)

Photosystem II reaction center protein I

Toggle Identical (HX)

Photosystem II reaction center protein K

Toggle Identical (IY)

Photosystem II reaction center protein L

Toggle Identical (JZ)

Photosystem II reaction center protein M

Toggle Identical (K0)

Photosystem II manganese-stabilizing polypeptide

Toggle Identical (L1)

Photosystem II reaction center protein T

Toggle Identical (M2)

Photosystem II 12 kDa extrinsic protein

Toggle Identical (N3)

Cytochrome c-550

Toggle Identical (O4)

Photosystem II reaction center X protein

Toggle Identical (P5)

Related Entries With Identical Sequence

7sa3.1