- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.2: 5 residues within 4Å:- Chain A: H.214, H.271
- Chain D: H.214, H.268
- Ligands: BCT.11
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.214, A:H.271, D:H.214, D:H.268
FE2.68: 5 residues within 4Å:- Chain Q: H.214, H.271
- Chain T: H.214, H.268
- Ligands: BCT.77
4 PLIP interactions:2 interactions with chain Q, 2 interactions with chain T- Metal complexes: Q:H.214, Q:H.271, T:H.214, T:H.268
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: N.180, H.331, E.332
- Chain D: K.317
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain C: G.356, E.357, T.358
Ligand excluded by PLIPCL.69: 4 residues within 4Å:- Chain Q: N.180, H.331, E.332
- Chain T: K.317
Ligand excluded by PLIPCL.97: 3 residues within 4Å:- Chain S: G.356, E.357, T.358
Ligand excluded by PLIP- 60 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.4: 29 residues within 4Å:- Chain A: Y.118, L.122, Y.146, P.149, V.150, A.152, T.153, S.155, V.156, M.182, F.183, F.185, Q.186, I.191, L.192, H.197, G.200, V.201, V.204, L.205, I.282, V.285, I.289
- Chain D: L.182
- Ligands: CLA.5, PHO.6, CL7.49, CLA.51, LHG.56
17 PLIP interactions:15 interactions with chain A, 2 interactions with chain D,- Hydrophobic interactions: A:L.122, A:P.149, A:V.150, A:T.153, A:F.183, A:F.185, A:Q.186, A:I.191, A:I.191, A:L.192, A:V.201, A:V.204, A:L.205, D:L.182, D:L.182
- pi-Stacking: A:H.197
- Metal complexes: A:H.197
CLA.5: 19 residues within 4Å:- Chain A: M.198, V.201, A.202, L.205, G.206, L.209, F.210, W.277
- Chain D: L.74, T.156, F.157, V.175, I.178, F.179, F.181, L.182
- Ligands: CLA.4, PHO.50, CLA.51
12 PLIP interactions:4 interactions with chain A, 7 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.201, A:L.209, A:F.210, A:W.277, D:T.156, D:F.157, D:F.157, D:F.179, D:F.181, D:L.182, D:L.182
- Metal complexes: H2O.2
CLA.7: 21 residues within 4Å:- Chain A: L.35, P.38, L.39, V.42, F.92, Y.93, P.94, I.95, W.96, Q.112, M.113, F.116, H.117
- Chain H: V.8, Y.9, T.11, V.12, S.13, F.15
- Ligands: BCR.8, CLA.36
23 PLIP interactions:15 interactions with chain A, 8 interactions with chain H,- Hydrophobic interactions: A:L.35, A:P.38, A:L.39, A:L.39, A:V.42, A:F.92, A:P.94, A:I.95, A:W.96, A:W.96, H:V.8, H:V.8, H:Y.9, H:Y.9, H:T.11, H:V.12, H:F.15, H:F.15
- Hydrogen bonds: A:I.95
- Salt bridges: A:H.117
- pi-Stacking: A:H.117, A:H.117
- Metal complexes: A:H.117
CLA.13: 8 residues within 4Å:- Chain B: W.185, G.186, A.187, F.190
- Chain G: F.47, L.54
- Ligands: CLA.14, RRX.61
5 PLIP interactions:3 interactions with chain G, 2 interactions with chain B,- Hydrophobic interactions: G:F.47, G:F.47, G:L.54, B:A.187, B:F.190
CLA.14: 23 residues within 4Å:- Chain B: E.184, W.185, G.189, F.190, H.201, A.204, L.205, V.208, S.247, F.250, I.251
- Chain D: L.158, I.159, L.162
- Chain G: L.44, F.47, I.48, I.51, L.52, Y.55
- Ligands: CLA.13, CLA.15, DGD.58
20 PLIP interactions:6 interactions with chain G, 3 interactions with chain D, 11 interactions with chain B,- Hydrophobic interactions: G:L.44, G:I.48, G:I.51, G:I.51, G:L.52, D:L.158, D:I.159, D:L.162, B:F.190, B:F.190, B:F.190, B:F.190, B:L.205, B:V.208, B:F.250, B:I.251, B:I.251
- pi-Stacking: G:F.47, B:H.201, B:H.201
CLA.15: 22 residues within 4Å:- Chain B: R.68, L.69, A.146, L.149, C.150, F.153, L.158, V.198, H.201, H.202, L.205, V.244, S.247, G.248, I.251, A.252, T.255, T.262
- Ligands: CLA.14, F6C.16, CLA.18, CLA.22
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:L.149, B:F.153, B:F.153, B:F.153, B:L.205, B:V.244
- Hydrogen bonds: B:R.68
- Water bridges: B:R.68
- Salt bridges: B:R.68, B:H.202
- pi-Stacking: B:H.201, B:H.202
CLA.17: 20 residues within 4Å:- Chain B: N.27, C.30, A.31, A.34, L.38, L.62, F.65, V.66, L.69, V.96, H.100, F.103, L.149
- Ligands: F6C.16, CLA.18, CLA.22, CLA.24, F6C.25, CLA.27, BCR.30
7 PLIP interactions:7 interactions with chain B,- Hydrophobic interactions: B:N.27, B:A.34, B:V.96, B:F.103, B:F.103, B:L.149
- Metal complexes: B:H.100
CLA.18: 19 residues within 4Å:- Chain B: L.69, G.70, V.71, W.91, A.99, H.100, I.102, F.103, L.149, G.152, F.153, F.156, H.157, F.162, G.163, P.164
- Ligands: CLA.15, CLA.17, BCR.30
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:V.71, B:W.91, B:W.91, B:W.91, B:A.99, B:I.102, B:F.103, B:F.153, B:F.156, B:F.162, B:F.162
- Salt bridges: B:H.100
- pi-Cation interactions: B:H.157, B:H.157
CLA.20: 20 residues within 4Å:- Chain B: L.229, G.236, A.239, S.240, A.243, F.246, S.247, F.463, H.466, I.467, G.470, L.471, L.474
- Chain D: L.36, I.123, M.126, L.127, I.130
- Ligands: CLA.22, DGD.58
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain D,- Hydrophobic interactions: B:A.243, B:F.246, B:F.463, B:F.463, B:I.467, B:L.471, B:L.474, B:L.474, D:L.36, D:I.123, D:I.123, D:M.126
- Water bridges: B:S.240
- pi-Cation interactions: B:H.466
- Metal complexes: B:H.466
CLA.21: 21 residues within 4Å:- Chain B: F.139, L.143, V.208, I.211, G.212, F.215, H.216, V.219, P.221, P.222, L.225, L.229, M.231
- Chain G: T.33, A.34, L.36, M.37, M.40
- Ligands: F6C.16, CLA.22, RRX.61
15 PLIP interactions:12 interactions with chain B, 3 interactions with chain G,- Hydrophobic interactions: B:F.139, B:F.139, B:L.143, B:V.208, B:I.211, B:F.215, B:F.215, B:F.215, B:L.225, G:L.36, G:M.37
- Salt bridges: B:H.216
- pi-Cation interactions: B:H.216
- Metal complexes: B:H.216
- Hydrogen bonds: G:T.33
CLA.22: 23 residues within 4Å:- Chain B: H.23, I.133, L.135, P.136, V.138, F.139, H.142, L.143, L.145, A.146, M.231, I.234, T.237, S.240, V.244, F.245
- Ligands: CLA.15, F6C.16, CLA.17, CLA.20, CLA.21, CLA.24, CLA.27
13 PLIP interactions:12 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:I.133, B:L.135, B:L.135, B:P.136, B:V.138, B:F.139, B:F.139, B:L.145, B:A.146, B:I.234
- Hydrogen bonds: B:H.142
- Salt bridges: B:H.142
- Metal complexes: H2O.4
CLA.23: 23 residues within 4Å:- Chain B: W.5, Y.6, R.7, V.8, H.9, T.10, L.238, L.242, F.458, L.461, W.462, F.464, G.465, W.468, H.469, R.472
- Ligands: F6C.16, CLA.24, F6C.25, CLA.26, BCR.29, LHG.55, LHG.62
20 PLIP interactions:20 interactions with chain B,- Hydrophobic interactions: B:V.8, B:H.9, B:T.10, B:L.238, B:L.238, B:L.242, B:L.242, B:F.458, B:L.461, B:W.462, B:W.462, B:F.464, B:W.468
- Salt bridges: B:H.9, B:H.469, B:R.472
- pi-Stacking: B:W.468, B:H.469, B:H.469
- Metal complexes: B:H.469
CLA.24: 22 residues within 4Å:- Chain B: H.9, V.12, L.13, L.19, V.22, H.23, H.26, N.27, C.30, I.234, T.237, L.238, G.241, L.242, F.245
- Ligands: F6C.16, CLA.17, CLA.22, CLA.23, F6C.25, CLA.26, CLA.27
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:H.9, B:V.12, B:L.13, B:L.13, B:L.13, B:L.19, B:V.22, B:I.234, B:I.234, B:T.237, B:L.238
- Salt bridges: B:H.23
- pi-Stacking: B:H.23, B:H.23, B:H.26
- Metal complexes: B:H.23
CLA.26: 18 residues within 4Å:- Chain B: V.8, H.9, S.11, V.12, V.22, M.25, L.29, W.115
- Chain J: V.13
- Chain K: F.21, L.25
- Ligands: CLA.23, CLA.24, F6C.25, BCR.28, LHG.62, SQD.129, LMT.131
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain K,- Hydrophobic interactions: B:V.8, B:V.12, B:M.25, B:L.29, B:W.115, K:F.21, K:L.25
- Hydrogen bonds: B:S.11
- pi-Stacking: B:H.9
- Metal complexes: B:H.9
CLA.27: 22 residues within 4Å:- Chain B: L.19, I.20, H.23, I.24, N.27, F.103, T.122, F.123, I.133, V.138, I.141, H.142, L.145
- Chain G: L.13, L.17, L.20, N.21
- Ligands: CLA.17, CLA.22, CLA.24, BCR.30, CLA.60
17 PLIP interactions:13 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:L.19, B:I.20, B:F.103, B:T.122, B:F.123, B:I.133, B:V.138, B:V.138, B:I.141, B:L.145, G:L.17, G:L.20, G:L.20, G:N.21
- Hydrogen bonds: B:H.23
- Salt bridges: B:H.23
- Metal complexes: B:H.142
CLA.32: 24 residues within 4Å:- Chain C: T.100, L.101, L.171, F.174, A.175, F.178, L.188, I.227, I.236, H.240, I.243, L.247, N.281, G.284, Q.285, I.288, F.292, A.299, Y.300
- Ligands: CLA.33, CLA.34, CLA.36, F6C.38, BCR.45
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:L.171, C:F.174, C:A.175, C:F.178, C:I.227, C:I.243, C:L.247, C:Q.285, C:I.288, C:F.292, C:A.299, C:Y.300
- Hydrogen bonds: C:Y.300
- pi-Stacking: C:F.178, C:H.240
- Metal complexes: C:H.240
CLA.33: 23 residues within 4Å:- Chain C: W.69, I.93, L.94, H.97, F.174, L.177, F.178, K.181, V.282, Q.285, A.286, A.289, I.293, Y.300, H.433, F.436, F.440
- Ligands: CLA.32, CLA.34, CLA.35, CLA.40, CLA.41, CLA.43
20 PLIP interactions:20 interactions with chain C,- Hydrophobic interactions: C:W.69, C:I.93, C:L.94, C:F.174, C:F.174, C:L.177, C:K.181, C:V.282, C:A.286, C:A.289, C:F.436, C:F.436, C:F.436, C:F.440, C:F.440
- Hydrogen bonds: C:Y.300
- Salt bridges: C:H.97, C:H.433
- pi-Stacking: C:H.433
- Metal complexes: C:H.433
CLA.34: 19 residues within 4Å:- Chain C: A.63, V.66, A.67, W.69, A.70, L.74, L.94, H.97, I.98, L.101, H.124, F.174, V.282, Q.285
- Ligands: CLA.32, CLA.33, F6C.38, CLA.40, CLA.41
7 PLIP interactions:7 interactions with chain C,- Hydrophobic interactions: C:V.66, C:A.67, C:W.69, C:A.70, C:F.174, C:V.282
- Metal complexes: C:H.124
CLA.35: 16 residues within 4Å:- Chain C: W.69, M.73, F.76, Q.90, G.91, I.93, L.407, S.409, W.428, L.429, A.432, H.433
- Chain I: P.25
- Ligands: CLA.33, CLA.41, DGD.47
10 PLIP interactions:9 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:F.76, C:I.93, C:I.93, C:W.428, C:W.428, C:W.428, C:L.429, C:A.432
- pi-Stacking: C:W.428
- Metal complexes: H2O.7
CLA.36: 23 residues within 4Å:- Chain A: F.32, L.35, L.123, C.124, L.126, G.127, W.130
- Chain C: T.273, S.276, Q.277, G.280, N.281, L.441, H.444, L.445, A.448, R.452
- Chain H: F.19, F.23
- Ligands: CLA.7, CLA.32, F6C.38, BCR.45
18 PLIP interactions:8 interactions with chain C, 9 interactions with chain A, 1 interactions with chain H,- Hydrophobic interactions: C:Q.277, C:L.441, C:L.445, C:A.448, A:F.32, A:F.32, A:F.32, A:L.123, A:L.126, A:W.130, A:W.130, A:W.130, H:F.23
- Hydrogen bonds: C:Q.277, C:R.452
- Salt bridges: C:R.452
- Metal complexes: C:H.444
- pi-Stacking: A:W.130
CLA.37: 16 residues within 4Å:- Chain C: L.164, I.168, I.246, A.249, G.250, W.253, H.254, V.257, P.258, P.259, L.260, W.262, T.263, F.267
- Ligands: F6C.38, BCR.45
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:L.164, C:I.168, C:I.246, C:A.249, C:W.253, C:W.262, C:W.262
- Hydrogen bonds: C:L.260, C:T.263
- Salt bridges: C:H.254
- Metal complexes: C:H.254
CLA.39: 20 residues within 4Å:- Chain C: Y.37, W.40, A.41, G.42, N.43, A.44, L.275, L.279, F.439, F.440, G.443, W.446, H.447, R.450
- Chain I: F.36
- Ligands: SQD.9, LHG.12, CLA.40, CLA.41, CLA.42
16 PLIP interactions:15 interactions with chain C, 1 interactions with chain I,- Hydrophobic interactions: C:A.44, C:L.275, C:L.275, C:L.279, C:L.279, C:F.440, C:F.440, C:W.446, I:F.36
- Hydrogen bonds: C:N.43, C:A.44
- Salt bridges: C:H.447, C:R.450
- pi-Stacking: C:W.446, C:H.447
- Metal complexes: C:H.447
CLA.40: 24 residues within 4Å:- Chain C: N.43, L.46, I.47, F.55, A.58, H.59, H.62, F.152, W.154, V.160, H.167, G.271, E.272, Y.274, L.275, S.278, L.279
- Ligands: CLA.33, CLA.34, F6C.38, CLA.39, CLA.41, CLA.42, CLA.43
20 PLIP interactions:20 interactions with chain C,- Hydrophobic interactions: C:N.43, C:L.46, C:F.55, C:F.55, C:F.55, C:A.58, C:H.62, C:F.152, C:F.152, C:W.154, C:W.154, C:W.154, C:V.160, C:Y.274, C:L.275, C:L.275
- Hydrogen bonds: C:S.278
- pi-Stacking: C:F.55, C:H.59
- Metal complexes: C:H.59
CLA.41: 18 residues within 4Å:- Chain C: N.43, H.62, L.65, V.66, W.69, F.439, F.440
- Chain I: P.28, I.29, F.31, L.32
- Ligands: LHG.12, CLA.33, CLA.34, CLA.35, CLA.39, CLA.40, CLA.42
13 PLIP interactions:8 interactions with chain C, 5 interactions with chain I,- Hydrophobic interactions: C:L.65, C:V.66, C:W.69, C:F.439, C:F.440, I:P.28, I:I.29, I:F.31, I:L.32, I:L.32
- Hydrogen bonds: C:N.43
- pi-Stacking: C:H.62
- Metal complexes: C:H.62
CLA.42: 21 residues within 4Å:- Chain C: G.29, Y.30, W.39, G.42, N.43, R.45, L.46, L.51, R.54, A.58, A.61, A.139, I.140
- Chain I: L.32, A.35, W.38, Q.39
- Ligands: CLA.39, CLA.40, CLA.41, BCR.48
13 PLIP interactions:7 interactions with chain I, 6 interactions with chain C,- Hydrophobic interactions: I:L.32, I:W.38, I:Q.39, C:L.46, C:R.54, C:A.61, C:A.139, C:I.140
- Water bridges: I:Q.39
- pi-Stacking: I:W.38, I:W.38, I:W.38
- Hydrogen bonds: C:R.45
CLA.43: 16 residues within 4Å:- Chain C: H.59, V.60, A.63, L.131, L.146, F.149, F.150, F.152, K.159, I.163, F.166, H.167, I.170
- Ligands: CLA.33, CLA.40, CLA.44
13 PLIP interactions:13 interactions with chain C,- Hydrophobic interactions: C:H.59, C:L.146, C:F.149, C:F.150, C:F.152, C:I.163, C:I.163, C:I.163, C:F.166, C:I.170, C:I.170
- pi-Stacking: C:H.167
- Metal complexes: C:H.167
CLA.44: 12 residues within 4Å:- Chain C: L.56, V.60, V.130, L.131, G.134, Y.137, H.138, P.143, L.146, Y.147, F.150
- Ligands: CLA.43
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:L.56, C:L.56, C:V.60, C:V.130, C:L.131, C:Y.137, C:Y.137, C:L.146, C:F.150, C:F.150
- Hydrogen bonds: C:Y.137
- Salt bridges: C:H.138
- pi-Stacking: C:H.138, C:H.138, C:F.150
- Metal complexes: C:H.138
CLA.51: 25 residues within 4Å:- Chain A: M.182, L.205
- Chain D: L.122, P.149, V.152, Y.153, T.156, F.181, L.182, F.185, Q.186, Y.191, T.192, H.197, G.200, V.201, V.204, L.279, S.282, A.283, M.286
- Ligands: CLA.4, CLA.5, CL7.49, PHO.50
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:L.122, D:V.152, D:Y.153, D:F.181, D:L.182, D:F.185, D:Q.186, D:Y.191, D:Y.191, D:T.192, D:V.201, D:V.201, D:V.204, D:L.279
- Hydrogen bonds: D:T.156
- pi-Stacking: D:Y.191
- Metal complexes: D:H.197
CLA.52: 18 residues within 4Å:- Chain D: L.35, P.39, C.40, L.43, L.89, L.90, L.91, L.92, W.93, T.112, F.113, L.116, H.117, F.120
- Chain G: L.49, Q.53
- Chain P: I.18, V.19
14 PLIP interactions:12 interactions with chain D, 2 interactions with chain P,- Hydrophobic interactions: D:P.39, D:L.43, D:L.92, D:W.93, D:W.93, D:L.116, D:F.120, P:I.18, P:V.19
- Hydrogen bonds: D:L.92
- Salt bridges: D:H.117
- pi-Stacking: D:F.113, D:H.117, D:H.117
CLA.60: 13 residues within 4Å:- Chain B: I.20, I.24, A.110, W.113, H.114, T.122, F.123
- Chain G: A.11, P.12, L.13, Q.14
- Ligands: CLA.27, BCR.30
12 PLIP interactions:1 interactions with chain G, 11 interactions with chain B,- Hydrogen bonds: G:L.13
- Hydrophobic interactions: B:I.20, B:I.20, B:I.24, B:I.24, B:A.110, B:W.113, B:W.113, B:F.123
- pi-Stacking: B:W.113, B:W.113
- Metal complexes: B:H.114
CLA.70: 29 residues within 4Å:- Chain Q: Y.118, L.122, Y.146, P.149, V.150, A.152, T.153, S.155, V.156, M.182, F.183, F.185, Q.186, I.191, L.192, H.197, G.200, V.201, V.204, L.205, I.282, V.285, I.289
- Chain T: L.182
- Ligands: CLA.71, PHO.72, CL7.115, CLA.117, LHG.122
17 PLIP interactions:2 interactions with chain T, 15 interactions with chain Q,- Hydrophobic interactions: T:L.182, T:L.182, Q:L.122, Q:P.149, Q:V.150, Q:T.153, Q:F.183, Q:F.185, Q:Q.186, Q:I.191, Q:I.191, Q:L.192, Q:V.201, Q:V.204, Q:L.205
- pi-Stacking: Q:H.197
- Metal complexes: Q:H.197
CLA.71: 19 residues within 4Å:- Chain Q: M.198, V.201, A.202, L.205, G.206, L.209, F.210, W.277
- Chain T: L.74, T.156, F.157, V.175, I.178, F.179, F.181, L.182
- Ligands: CLA.70, PHO.116, CLA.117
12 PLIP interactions:7 interactions with chain T, 4 interactions with chain Q, 1 Ligand-Water interactions,- Hydrophobic interactions: T:T.156, T:F.157, T:F.157, T:F.179, T:F.181, T:L.182, T:L.182, Q:V.201, Q:L.209, Q:F.210, Q:W.277
- Metal complexes: H2O.13
CLA.73: 21 residues within 4Å:- Chain Q: L.35, P.38, L.39, V.42, F.92, Y.93, P.94, I.95, W.96, Q.112, M.113, F.116, H.117
- Chain X: V.8, Y.9, T.11, V.12, S.13, F.15
- Ligands: BCR.74, CLA.102
23 PLIP interactions:15 interactions with chain Q, 8 interactions with chain X,- Hydrophobic interactions: Q:L.35, Q:P.38, Q:L.39, Q:L.39, Q:V.42, Q:F.92, Q:P.94, Q:I.95, Q:W.96, Q:W.96, X:V.8, X:V.8, X:Y.9, X:Y.9, X:T.11, X:V.12, X:F.15, X:F.15
- Hydrogen bonds: Q:I.95
- Salt bridges: Q:H.117
- pi-Stacking: Q:H.117, Q:H.117
- Metal complexes: Q:H.117
CLA.79: 8 residues within 4Å:- Chain R: W.185, G.186, A.187, F.190
- Chain W: F.47, L.54
- Ligands: CLA.80, RRX.127
5 PLIP interactions:3 interactions with chain W, 2 interactions with chain R,- Hydrophobic interactions: W:F.47, W:F.47, W:L.54, R:A.187, R:F.190
CLA.80: 23 residues within 4Å:- Chain R: E.184, W.185, G.189, F.190, H.201, A.204, L.205, V.208, S.247, F.250, I.251
- Chain T: L.158, I.159, L.162
- Chain W: L.44, F.47, I.48, I.51, L.52, Y.55
- Ligands: CLA.79, CLA.81, DGD.124
20 PLIP interactions:11 interactions with chain R, 3 interactions with chain T, 6 interactions with chain W,- Hydrophobic interactions: R:F.190, R:F.190, R:F.190, R:F.190, R:L.205, R:V.208, R:F.250, R:I.251, R:I.251, T:L.158, T:I.159, T:L.162, W:L.44, W:I.48, W:I.51, W:I.51, W:L.52
- pi-Stacking: R:H.201, R:H.201, W:F.47
CLA.81: 22 residues within 4Å:- Chain R: R.68, L.69, A.146, L.149, C.150, F.153, L.158, V.198, H.201, H.202, L.205, V.244, S.247, G.248, I.251, A.252, T.255, T.262
- Ligands: CLA.80, F6C.82, CLA.84, CLA.88
12 PLIP interactions:12 interactions with chain R,- Hydrophobic interactions: R:L.149, R:F.153, R:F.153, R:F.153, R:L.205, R:V.244
- Hydrogen bonds: R:R.68
- Water bridges: R:R.68
- Salt bridges: R:R.68, R:H.202
- pi-Stacking: R:H.201, R:H.202
CLA.83: 20 residues within 4Å:- Chain R: N.27, C.30, A.31, A.34, L.38, L.62, F.65, V.66, L.69, V.96, H.100, F.103, L.149
- Ligands: F6C.82, CLA.84, CLA.88, CLA.90, F6C.91, CLA.93, BCR.96
7 PLIP interactions:7 interactions with chain R,- Hydrophobic interactions: R:N.27, R:A.34, R:V.96, R:F.103, R:F.103, R:L.149
- Metal complexes: R:H.100
CLA.84: 19 residues within 4Å:- Chain R: L.69, G.70, V.71, W.91, A.99, H.100, I.102, F.103, L.149, G.152, F.153, F.156, H.157, F.162, G.163, P.164
- Ligands: CLA.81, CLA.83, BCR.96
14 PLIP interactions:14 interactions with chain R,- Hydrophobic interactions: R:V.71, R:W.91, R:W.91, R:W.91, R:A.99, R:I.102, R:F.103, R:F.153, R:F.156, R:F.162, R:F.162
- Salt bridges: R:H.100
- pi-Cation interactions: R:H.157, R:H.157
CLA.86: 20 residues within 4Å:- Chain R: L.229, G.236, A.239, S.240, A.243, F.246, S.247, F.463, H.466, I.467, G.470, L.471, L.474
- Chain T: L.36, I.123, M.126, L.127, I.130
- Ligands: CLA.88, DGD.124
15 PLIP interactions:11 interactions with chain R, 4 interactions with chain T,- Hydrophobic interactions: R:A.243, R:F.246, R:F.463, R:F.463, R:I.467, R:L.471, R:L.474, R:L.474, T:L.36, T:I.123, T:I.123, T:M.126
- Water bridges: R:S.240
- pi-Cation interactions: R:H.466
- Metal complexes: R:H.466
CLA.87: 21 residues within 4Å:- Chain R: F.139, L.143, V.208, I.211, G.212, F.215, H.216, V.219, P.221, P.222, L.225, L.229, M.231
- Chain W: T.33, A.34, L.36, M.37, M.40
- Ligands: F6C.82, CLA.88, RRX.127
15 PLIP interactions:12 interactions with chain R, 3 interactions with chain W,- Hydrophobic interactions: R:F.139, R:F.139, R:L.143, R:V.208, R:I.211, R:F.215, R:F.215, R:F.215, R:L.225, W:L.36, W:M.37
- Salt bridges: R:H.216
- pi-Cation interactions: R:H.216
- Metal complexes: R:H.216
- Hydrogen bonds: W:T.33
CLA.88: 23 residues within 4Å:- Chain R: H.23, I.133, L.135, P.136, V.138, F.139, H.142, L.143, L.145, A.146, M.231, I.234, T.237, S.240, V.244, F.245
- Ligands: CLA.81, F6C.82, CLA.83, CLA.86, CLA.87, CLA.90, CLA.93
13 PLIP interactions:12 interactions with chain R, 1 Ligand-Water interactions,- Hydrophobic interactions: R:I.133, R:L.135, R:L.135, R:P.136, R:V.138, R:F.139, R:F.139, R:L.145, R:A.146, R:I.234
- Hydrogen bonds: R:H.142
- Salt bridges: R:H.142
- Metal complexes: H2O.16
CLA.89: 23 residues within 4Å:- Chain R: W.5, Y.6, R.7, V.8, H.9, T.10, L.238, L.242, F.458, L.461, W.462, F.464, G.465, W.468, H.469, R.472
- Ligands: F6C.82, CLA.90, F6C.91, CLA.92, BCR.95, LHG.121, LHG.128
20 PLIP interactions:20 interactions with chain R,- Hydrophobic interactions: R:V.8, R:H.9, R:T.10, R:L.238, R:L.238, R:L.242, R:L.242, R:F.458, R:L.461, R:W.462, R:W.462, R:F.464, R:W.468
- Salt bridges: R:H.9, R:H.469, R:R.472
- pi-Stacking: R:W.468, R:H.469, R:H.469
- Metal complexes: R:H.469
CLA.90: 22 residues within 4Å:- Chain R: H.9, V.12, L.13, L.19, V.22, H.23, H.26, N.27, C.30, I.234, T.237, L.238, G.241, L.242, F.245
- Ligands: F6C.82, CLA.83, CLA.88, CLA.89, F6C.91, CLA.92, CLA.93
16 PLIP interactions:16 interactions with chain R,- Hydrophobic interactions: R:H.9, R:V.12, R:L.13, R:L.13, R:L.13, R:L.19, R:V.22, R:I.234, R:I.234, R:T.237, R:L.238
- Salt bridges: R:H.23
- pi-Stacking: R:H.23, R:H.23, R:H.26
- Metal complexes: R:H.23
CLA.92: 18 residues within 4Å:- Chain 0: F.21, L.25
- Chain R: V.8, H.9, S.11, V.12, V.22, M.25, L.29, W.115
- Chain Z: V.13
- Ligands: SQD.63, LMT.65, CLA.89, CLA.90, F6C.91, BCR.94, LHG.128
10 PLIP interactions:8 interactions with chain R, 2 interactions with chain 0,- Hydrophobic interactions: R:V.8, R:V.12, R:M.25, R:L.29, R:W.115, 0:F.21, 0:L.25
- Hydrogen bonds: R:S.11
- pi-Stacking: R:H.9
- Metal complexes: R:H.9
CLA.93: 22 residues within 4Å:- Chain R: L.19, I.20, H.23, I.24, N.27, F.103, T.122, F.123, I.133, V.138, I.141, H.142, L.145
- Chain W: L.13, L.17, L.20, N.21
- Ligands: CLA.83, CLA.88, CLA.90, BCR.96, CLA.126
17 PLIP interactions:4 interactions with chain W, 13 interactions with chain R,- Hydrophobic interactions: W:L.17, W:L.20, W:L.20, W:N.21, R:L.19, R:I.20, R:F.103, R:T.122, R:F.123, R:I.133, R:V.138, R:V.138, R:I.141, R:L.145
- Hydrogen bonds: R:H.23
- Salt bridges: R:H.23
- Metal complexes: R:H.142
CLA.98: 24 residues within 4Å:- Chain S: T.100, L.101, L.171, F.174, A.175, F.178, L.188, I.227, I.236, H.240, I.243, L.247, N.281, G.284, Q.285, I.288, F.292, A.299, Y.300
- Ligands: CLA.99, CLA.100, CLA.102, F6C.104, BCR.111
16 PLIP interactions:16 interactions with chain S,- Hydrophobic interactions: S:L.171, S:F.174, S:A.175, S:F.178, S:I.227, S:I.243, S:L.247, S:Q.285, S:I.288, S:F.292, S:A.299, S:Y.300
- Hydrogen bonds: S:Y.300
- pi-Stacking: S:F.178, S:H.240
- Metal complexes: S:H.240
CLA.99: 23 residues within 4Å:- Chain S: W.69, I.93, L.94, H.97, F.174, L.177, F.178, K.181, V.282, Q.285, A.286, A.289, I.293, Y.300, H.433, F.436, F.440
- Ligands: CLA.98, CLA.100, CLA.101, CLA.106, CLA.107, CLA.109
20 PLIP interactions:20 interactions with chain S,- Hydrophobic interactions: S:W.69, S:I.93, S:L.94, S:F.174, S:F.174, S:L.177, S:K.181, S:V.282, S:A.286, S:A.289, S:F.436, S:F.436, S:F.436, S:F.440, S:F.440
- Hydrogen bonds: S:Y.300
- Salt bridges: S:H.97, S:H.433
- pi-Stacking: S:H.433
- Metal complexes: S:H.433
CLA.100: 19 residues within 4Å:- Chain S: A.63, V.66, A.67, W.69, A.70, L.74, L.94, H.97, I.98, L.101, H.124, F.174, V.282, Q.285
- Ligands: CLA.98, CLA.99, F6C.104, CLA.106, CLA.107
7 PLIP interactions:7 interactions with chain S,- Hydrophobic interactions: S:V.66, S:A.67, S:W.69, S:A.70, S:F.174, S:V.282
- Metal complexes: S:H.124
CLA.101: 16 residues within 4Å:- Chain S: W.69, M.73, F.76, Q.90, G.91, I.93, L.407, S.409, W.428, L.429, A.432, H.433
- Chain Y: P.25
- Ligands: CLA.99, CLA.107, DGD.113
10 PLIP interactions:9 interactions with chain S, 1 Ligand-Water interactions,- Hydrophobic interactions: S:F.76, S:I.93, S:I.93, S:W.428, S:W.428, S:W.428, S:L.429, S:A.432
- pi-Stacking: S:W.428
- Metal complexes: H2O.19
CLA.102: 23 residues within 4Å:- Chain Q: F.32, L.35, L.123, C.124, L.126, G.127, W.130
- Chain S: T.273, S.276, Q.277, G.280, N.281, L.441, H.444, L.445, A.448, R.452
- Chain X: F.19, F.23
- Ligands: CLA.73, CLA.98, F6C.104, BCR.111
18 PLIP interactions:9 interactions with chain Q, 8 interactions with chain S, 1 interactions with chain X,- Hydrophobic interactions: Q:F.32, Q:F.32, Q:F.32, Q:L.123, Q:L.126, Q:W.130, Q:W.130, Q:W.130, S:Q.277, S:L.441, S:L.445, S:A.448, X:F.23
- pi-Stacking: Q:W.130
- Hydrogen bonds: S:Q.277, S:R.452
- Salt bridges: S:R.452
- Metal complexes: S:H.444
CLA.103: 16 residues within 4Å:- Chain S: L.164, I.168, I.246, A.249, G.250, W.253, H.254, V.257, P.258, P.259, L.260, W.262, T.263, F.267
- Ligands: F6C.104, BCR.111
11 PLIP interactions:11 interactions with chain S,- Hydrophobic interactions: S:L.164, S:I.168, S:I.246, S:A.249, S:W.253, S:W.262, S:W.262
- Hydrogen bonds: S:L.260, S:T.263
- Salt bridges: S:H.254
- Metal complexes: S:H.254
CLA.105: 20 residues within 4Å:- Chain S: Y.37, W.40, A.41, G.42, N.43, A.44, L.275, L.279, F.439, F.440, G.443, W.446, H.447, R.450
- Chain Y: F.36
- Ligands: SQD.75, LHG.78, CLA.106, CLA.107, CLA.108
16 PLIP interactions:15 interactions with chain S, 1 interactions with chain Y,- Hydrophobic interactions: S:A.44, S:L.275, S:L.275, S:L.279, S:L.279, S:F.440, S:F.440, S:W.446, Y:F.36
- Hydrogen bonds: S:N.43, S:A.44
- Salt bridges: S:H.447, S:R.450
- pi-Stacking: S:W.446, S:H.447
- Metal complexes: S:H.447
CLA.106: 24 residues within 4Å:- Chain S: N.43, L.46, I.47, F.55, A.58, H.59, H.62, F.152, W.154, V.160, H.167, G.271, E.272, Y.274, L.275, S.278, L.279
- Ligands: CLA.99, CLA.100, F6C.104, CLA.105, CLA.107, CLA.108, CLA.109
20 PLIP interactions:20 interactions with chain S,- Hydrophobic interactions: S:N.43, S:L.46, S:F.55, S:F.55, S:F.55, S:A.58, S:H.62, S:F.152, S:F.152, S:W.154, S:W.154, S:W.154, S:V.160, S:Y.274, S:L.275, S:L.275
- Hydrogen bonds: S:S.278
- pi-Stacking: S:F.55, S:H.59
- Metal complexes: S:H.59
CLA.107: 18 residues within 4Å:- Chain S: N.43, H.62, L.65, V.66, W.69, F.439, F.440
- Chain Y: P.28, I.29, F.31, L.32
- Ligands: LHG.78, CLA.99, CLA.100, CLA.101, CLA.105, CLA.106, CLA.108
13 PLIP interactions:8 interactions with chain S, 5 interactions with chain Y,- Hydrophobic interactions: S:L.65, S:V.66, S:W.69, S:F.439, S:F.440, Y:P.28, Y:I.29, Y:F.31, Y:L.32, Y:L.32
- Hydrogen bonds: S:N.43
- pi-Stacking: S:H.62
- Metal complexes: S:H.62
CLA.108: 21 residues within 4Å:- Chain S: G.29, Y.30, W.39, G.42, N.43, R.45, L.46, L.51, R.54, A.58, A.61, A.139, I.140
- Chain Y: L.32, A.35, W.38, Q.39
- Ligands: CLA.105, CLA.106, CLA.107, BCR.114
13 PLIP interactions:7 interactions with chain Y, 6 interactions with chain S,- Hydrophobic interactions: Y:L.32, Y:W.38, Y:Q.39, S:L.46, S:R.54, S:A.61, S:A.139, S:I.140
- Water bridges: Y:Q.39
- pi-Stacking: Y:W.38, Y:W.38, Y:W.38
- Hydrogen bonds: S:R.45
CLA.109: 16 residues within 4Å:- Chain S: H.59, V.60, A.63, L.131, L.146, F.149, F.150, F.152, K.159, I.163, F.166, H.167, I.170
- Ligands: CLA.99, CLA.106, CLA.110
13 PLIP interactions:13 interactions with chain S,- Hydrophobic interactions: S:H.59, S:L.146, S:F.149, S:F.150, S:F.152, S:I.163, S:I.163, S:I.163, S:F.166, S:I.170, S:I.170
- pi-Stacking: S:H.167
- Metal complexes: S:H.167
CLA.110: 12 residues within 4Å:- Chain S: L.56, V.60, V.130, L.131, G.134, Y.137, H.138, P.143, L.146, Y.147, F.150
- Ligands: CLA.109
16 PLIP interactions:16 interactions with chain S,- Hydrophobic interactions: S:L.56, S:L.56, S:V.60, S:V.130, S:L.131, S:Y.137, S:Y.137, S:L.146, S:F.150, S:F.150
- Hydrogen bonds: S:Y.137
- Salt bridges: S:H.138
- pi-Stacking: S:H.138, S:H.138, S:F.150
- Metal complexes: S:H.138
CLA.117: 25 residues within 4Å:- Chain Q: M.182, L.205
- Chain T: L.122, P.149, V.152, Y.153, T.156, F.181, L.182, F.185, Q.186, Y.191, T.192, H.197, G.200, V.201, V.204, L.279, S.282, A.283, M.286
- Ligands: CLA.70, CLA.71, CL7.115, PHO.116
17 PLIP interactions:17 interactions with chain T,- Hydrophobic interactions: T:L.122, T:V.152, T:Y.153, T:F.181, T:L.182, T:F.185, T:Q.186, T:Y.191, T:Y.191, T:T.192, T:V.201, T:V.201, T:V.204, T:L.279
- Hydrogen bonds: T:T.156
- pi-Stacking: T:Y.191
- Metal complexes: T:H.197
CLA.118: 18 residues within 4Å:- Chain 5: I.18, V.19
- Chain T: L.35, P.39, C.40, L.43, L.89, L.90, L.91, L.92, W.93, T.112, F.113, L.116, H.117, F.120
- Chain W: L.49, Q.53
14 PLIP interactions:12 interactions with chain T, 2 interactions with chain 5,- Hydrophobic interactions: T:P.39, T:L.43, T:L.92, T:W.93, T:W.93, T:L.116, T:F.120, 5:I.18, 5:V.19
- Hydrogen bonds: T:L.92
- Salt bridges: T:H.117
- pi-Stacking: T:F.113, T:H.117, T:H.117
CLA.126: 13 residues within 4Å:- Chain R: I.20, I.24, A.110, W.113, H.114, T.122, F.123
- Chain W: A.11, P.12, L.13, Q.14
- Ligands: CLA.93, BCR.96
12 PLIP interactions:1 interactions with chain W, 11 interactions with chain R,- Hydrogen bonds: W:L.13
- Hydrophobic interactions: R:I.20, R:I.20, R:I.24, R:I.24, R:A.110, R:W.113, R:W.113, R:F.123
- pi-Stacking: R:W.113, R:W.113
- Metal complexes: R:H.114
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.6: 29 residues within 4Å:- Chain A: L.40, S.43, I.44, F.47, I.114, Y.118, L.122, Y.125, E.129, A.145, Y.146, A.148, P.149, L.171, M.173, G.174, T.178, P.278, V.279, I.282
- Chain D: L.205, A.208, L.209, A.212, I.213, W.253, F.257
- Ligands: CLA.4, CL7.49
18 PLIP interactions:14 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:L.40, A:I.44, A:F.47, A:I.114, A:Y.118, A:Y.125, A:A.145, A:Y.146, A:Y.146, A:A.148, A:P.149, A:L.171, A:I.282, D:L.205, D:L.209, D:A.212, D:F.257
- Hydrogen bonds: A:Y.146
PHO.50: 31 residues within 4Å:- Chain A: L.205, S.208, L.209, M.213, L.257
- Chain D: L.37, S.41, A.44, I.45, W.48, T.114, G.118, G.121, L.122, F.125, Q.129, N.142, A.145, F.146, A.148, P.149, Y.153, F.173, G.174, V.175, P.275, V.276, L.279
- Ligands: CLA.5, PL9.10, CLA.51
23 PLIP interactions:21 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.44, D:I.45, D:W.48, D:W.48, D:T.114, D:L.122, D:F.125, D:F.125, D:A.145, D:F.146, D:F.146, D:A.148, D:P.149, D:Y.153, D:F.173, D:F.173, D:V.175, D:P.275, D:V.276, D:L.279, A:L.205, A:L.209
- Hydrogen bonds: D:N.142
PHO.72: 29 residues within 4Å:- Chain Q: L.40, S.43, I.44, F.47, I.114, Y.118, L.122, Y.125, E.129, A.145, Y.146, A.148, P.149, L.171, M.173, G.174, T.178, P.278, V.279, I.282
- Chain T: L.205, A.208, L.209, A.212, I.213, W.253, F.257
- Ligands: CLA.70, CL7.115
18 PLIP interactions:14 interactions with chain Q, 4 interactions with chain T- Hydrophobic interactions: Q:L.40, Q:I.44, Q:F.47, Q:I.114, Q:Y.118, Q:Y.125, Q:A.145, Q:Y.146, Q:Y.146, Q:A.148, Q:P.149, Q:L.171, Q:I.282, T:L.205, T:L.209, T:A.212, T:F.257
- Hydrogen bonds: Q:Y.146
PHO.116: 31 residues within 4Å:- Chain Q: L.205, S.208, L.209, M.213, L.257
- Chain T: L.37, S.41, A.44, I.45, W.48, T.114, G.118, G.121, L.122, F.125, Q.129, N.142, A.145, F.146, A.148, P.149, Y.153, F.173, G.174, V.175, P.275, V.276, L.279
- Ligands: CLA.71, PL9.76, CLA.117
23 PLIP interactions:21 interactions with chain T, 2 interactions with chain Q- Hydrophobic interactions: T:A.44, T:I.45, T:W.48, T:W.48, T:T.114, T:L.122, T:F.125, T:F.125, T:A.145, T:F.146, T:F.146, T:A.148, T:P.149, T:Y.153, T:F.173, T:F.173, T:V.175, T:P.275, T:V.276, T:L.279, Q:L.205, Q:L.209
- Hydrogen bonds: T:N.142
- 14 x BCR: BETA-CAROTENE(Non-covalent)
BCR.8: 18 residues within 4Å:- Chain A: W.19, V.34, L.37, P.38, G.41, V.42, T.45, V.46, T.49, A.50, A.53, A.54, W.104, L.105, P.110
- Chain H: F.15, L.18
- Ligands: CLA.7
18 PLIP interactions:15 interactions with chain A, 3 interactions with chain H- Hydrophobic interactions: A:W.19, A:V.34, A:L.37, A:P.38, A:P.38, A:V.42, A:V.42, A:V.46, A:T.49, A:A.50, A:A.53, A:W.104, A:W.104, A:L.105, A:P.110, H:F.15, H:F.15, H:L.18
BCR.28: 13 residues within 4Å:- Chain 2: F.19
- Chain B: M.25, L.29, F.108, A.111, C.112, W.115
- Ligands: F6C.19, F6C.25, CLA.26, BCR.29, LMG.64, SQD.129
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain 2- Hydrophobic interactions: B:L.29, B:F.108, B:W.115, B:W.115, 2:F.19
BCR.29: 12 residues within 4Å:- Chain B: L.29, G.32, F.33, S.36, I.101, I.102, S.104, G.105, L.109
- Ligands: F6C.19, CLA.23, BCR.28
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.29, B:F.33, B:F.33, B:I.101, B:I.102, B:L.109, B:L.109
BCR.30: 16 residues within 4Å:- Chain 2: F.18, A.22, F.23
- Chain B: F.103, L.106, L.109, A.110, C.112, W.113, V.116, Y.117
- Chain S: P.477
- Ligands: CLA.17, CLA.18, CLA.27, CLA.60
12 PLIP interactions:8 interactions with chain B, 1 interactions with chain S, 3 interactions with chain 2- Hydrophobic interactions: B:F.103, B:L.106, B:L.106, B:L.109, B:A.110, B:W.113, B:V.116, B:Y.117, S:P.477, 2:F.18, 2:A.22, 2:F.23
BCR.45: 18 residues within 4Å:- Chain C: I.212, F.213, Y.215, L.216, I.227, V.230, D.235, I.236, G.239, H.240, I.243, F.267, N.281
- Chain H: F.23
- Ligands: CLA.32, CLA.36, CLA.37, F6C.38
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain H- Hydrophobic interactions: C:F.213, C:Y.215, C:L.216, C:L.216, C:I.227, C:V.230, C:I.243, C:I.243, C:F.267, H:F.23
BCR.48: 10 residues within 4Å:- Chain C: A.61, G.64, L.65, S.128, G.132, M.136
- Chain I: F.31, L.34, W.38
- Ligands: CLA.42
6 PLIP interactions:4 interactions with chain I, 2 interactions with chain C- Hydrophobic interactions: I:F.31, I:F.31, I:L.34, I:W.38, C:A.61, C:L.65
BCR.53: 13 residues within 4Å:- Chain D: F.42, L.43, G.46, A.47, F.49, T.50, L.110, F.113
- Chain F: S.29, F.32, L.33, I.36
- Ligands: LMG.57
13 PLIP interactions:10 interactions with chain D, 3 interactions with chain F- Hydrophobic interactions: D:F.42, D:A.47, D:F.49, D:F.49, D:F.49, D:F.49, D:F.49, D:T.50, D:L.110, D:F.113, F:F.32, F:L.33, F:I.36
BCR.74: 18 residues within 4Å:- Chain Q: W.19, V.34, L.37, P.38, G.41, V.42, T.45, V.46, T.49, A.50, A.53, A.54, W.104, L.105, P.110
- Chain X: F.15, L.18
- Ligands: CLA.73
18 PLIP interactions:15 interactions with chain Q, 3 interactions with chain X- Hydrophobic interactions: Q:W.19, Q:V.34, Q:L.37, Q:P.38, Q:P.38, Q:V.42, Q:V.42, Q:V.46, Q:T.49, Q:A.50, Q:A.53, Q:W.104, Q:W.104, Q:L.105, Q:P.110, X:F.15, X:F.15, X:L.18
BCR.94: 13 residues within 4Å:- Chain M: F.19
- Chain R: M.25, L.29, F.108, A.111, C.112, W.115
- Ligands: SQD.63, F6C.85, F6C.91, CLA.92, BCR.95, LMG.130
5 PLIP interactions:4 interactions with chain R, 1 interactions with chain M- Hydrophobic interactions: R:L.29, R:F.108, R:W.115, R:W.115, M:F.19
BCR.95: 12 residues within 4Å:- Chain R: L.29, G.32, F.33, S.36, I.101, I.102, S.104, G.105, L.109
- Ligands: F6C.85, CLA.89, BCR.94
7 PLIP interactions:7 interactions with chain R- Hydrophobic interactions: R:L.29, R:F.33, R:F.33, R:I.101, R:I.102, R:L.109, R:L.109
BCR.96: 16 residues within 4Å:- Chain C: P.477
- Chain M: F.18, A.22, F.23
- Chain R: F.103, L.106, L.109, A.110, C.112, W.113, V.116, Y.117
- Ligands: CLA.83, CLA.84, CLA.93, CLA.126
12 PLIP interactions:8 interactions with chain R, 3 interactions with chain M, 1 interactions with chain C- Hydrophobic interactions: R:F.103, R:L.106, R:L.106, R:L.109, R:A.110, R:W.113, R:V.116, R:Y.117, M:F.18, M:A.22, M:F.23, C:P.477
BCR.111: 18 residues within 4Å:- Chain S: I.212, F.213, Y.215, L.216, I.227, V.230, D.235, I.236, G.239, H.240, I.243, F.267, N.281
- Chain X: F.23
- Ligands: CLA.98, CLA.102, CLA.103, F6C.104
10 PLIP interactions:9 interactions with chain S, 1 interactions with chain X- Hydrophobic interactions: S:F.213, S:Y.215, S:L.216, S:L.216, S:I.227, S:V.230, S:I.243, S:I.243, S:F.267, X:F.23
BCR.114: 10 residues within 4Å:- Chain S: A.61, G.64, L.65, S.128, G.132, M.136
- Chain Y: F.31, L.34, W.38
- Ligands: CLA.108
6 PLIP interactions:4 interactions with chain Y, 2 interactions with chain S- Hydrophobic interactions: Y:F.31, Y:F.31, Y:L.34, Y:W.38, S:A.61, S:L.65
BCR.119: 13 residues within 4Å:- Chain T: F.42, L.43, G.46, A.47, F.49, T.50, L.110, F.113
- Chain V: S.29, F.32, L.33, I.36
- Ligands: LMG.123
13 PLIP interactions:10 interactions with chain T, 3 interactions with chain V- Hydrophobic interactions: T:F.42, T:A.47, T:F.49, T:F.49, T:F.49, T:F.49, T:F.49, T:T.50, T:L.110, T:F.113, V:F.32, V:L.33, V:I.36
- 4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Covalent)(Non-covalent)
SQD.9: 15 residues within 4Å:- Chain A: L.199, Q.269, F.272, F.273, A.276, W.277, V.280, C.281
- Chain C: W.39, W.40
- Chain D: N.230, F.232
- Chain I: F.36
- Ligands: LHG.12, CLA.39
11 PLIP interactions:7 interactions with chain A, 1 interactions with chain C, 3 interactions with chain I- Hydrophobic interactions: A:L.199, A:F.272, A:F.272, A:F.273, A:W.277, A:V.280, C:W.39, I:F.36, I:F.36, I:F.36
- Hydrogen bonds: A:Q.269
SQD.63: 15 residues within 4Å:- Chain C: S.478
- Chain J: R.17, L.20, Y.21, L.24
- Chain K: Y.26
- Chain M: G.15, F.19, F.23, R.24, P.26
- Chain R: R.18, W.115
- Ligands: CLA.92, BCR.94
16 PLIP interactions:7 interactions with chain J, 4 interactions with chain M, 2 interactions with chain R, 1 interactions with chain C, 2 interactions with chain K- Hydrophobic interactions: J:L.20, J:Y.21, J:L.24, M:F.19, M:F.19, K:Y.26
- Hydrogen bonds: J:R.17, J:R.17, C:S.478, K:Y.26
- Salt bridges: J:R.17, J:R.17, R:R.18
- Water bridges: M:A.22, M:R.24, R:R.18
SQD.75: 15 residues within 4Å:- Chain Q: L.199, Q.269, F.272, F.273, A.276, W.277, V.280, C.281
- Chain S: W.39, W.40
- Chain T: N.230, F.232
- Chain Y: F.36
- Ligands: LHG.78, CLA.105
11 PLIP interactions:7 interactions with chain Q, 1 interactions with chain S, 3 interactions with chain Y- Hydrophobic interactions: Q:L.199, Q:F.272, Q:F.272, Q:F.273, Q:W.277, Q:V.280, S:W.39, Y:F.36, Y:F.36, Y:F.36
- Hydrogen bonds: Q:Q.269
SQD.129: 15 residues within 4Å:- Chain 0: Y.26
- Chain 2: G.15, F.19, F.23, R.24, P.26
- Chain B: R.18, W.115
- Chain S: S.478
- Chain Z: R.17, L.20, Y.21, L.24
- Ligands: CLA.26, BCR.28
16 PLIP interactions:7 interactions with chain Z, 4 interactions with chain 2, 1 interactions with chain S, 2 interactions with chain 0, 2 interactions with chain B- Hydrophobic interactions: Z:L.20, Z:Y.21, Z:L.24, 2:F.19, 2:F.19, 0:Y.26
- Hydrogen bonds: Z:R.17, Z:R.17, S:S.478, 0:Y.26
- Salt bridges: Z:R.17, Z:R.17, B:R.18
- Water bridges: 2:A.22, 2:R.24, B:R.18
- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.10: 12 residues within 4Å:- Chain A: F.210, M.213, H.214, L.217, I.247, H.251, F.254, S.263, F.264, L.270, L.274
- Ligands: PHO.50
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:F.210, A:F.210, A:H.214, A:L.217, A:I.247, A:H.251, A:F.254, A:L.270, A:L.274
- Hydrogen bonds: A:H.214
PL9.54: 28 residues within 4Å:- Chain A: I.175
- Chain D: M.198, M.199, T.202, G.203, G.206, L.209, L.210, H.214, T.217, Y.244, M.246, A.249, N.250, W.253, F.257, A.260, F.261, L.267, F.270, V.274, T.277, G.278
- Chain J: V.29, L.33
- Ligands: CL7.49, LHG.56, LHG.62
20 PLIP interactions:1 interactions with chain A, 18 interactions with chain D, 1 interactions with chain J- Hydrophobic interactions: A:I.175, D:M.199, D:L.209, D:L.210, D:T.217, D:Y.244, D:A.249, D:W.253, D:F.257, D:F.261, D:F.261, D:F.261, D:L.267, D:F.270, D:F.270, D:V.274, D:V.274, J:L.33
- Hydrogen bonds: D:H.214, D:F.261
PL9.76: 12 residues within 4Å:- Chain Q: F.210, M.213, H.214, L.217, I.247, H.251, F.254, S.263, F.264, L.270, L.274
- Ligands: PHO.116
10 PLIP interactions:10 interactions with chain Q- Hydrophobic interactions: Q:F.210, Q:F.210, Q:H.214, Q:L.217, Q:I.247, Q:H.251, Q:F.254, Q:L.270, Q:L.274
- Hydrogen bonds: Q:H.214
PL9.120: 28 residues within 4Å:- Chain Q: I.175
- Chain T: M.198, M.199, T.202, G.203, G.206, L.209, L.210, H.214, T.217, Y.244, M.246, A.249, N.250, W.253, F.257, A.260, F.261, L.267, F.270, V.274, T.277, G.278
- Chain Z: V.29, L.33
- Ligands: CL7.115, LHG.122, LHG.128
20 PLIP interactions:18 interactions with chain T, 1 interactions with chain Q, 1 interactions with chain Z- Hydrophobic interactions: T:M.199, T:L.209, T:L.210, T:T.217, T:Y.244, T:A.249, T:W.253, T:F.257, T:F.261, T:F.261, T:F.261, T:L.267, T:F.270, T:F.270, T:V.274, T:V.274, Q:I.175, Z:L.33
- Hydrogen bonds: T:H.214, T:F.261
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.11: 7 residues within 4Å:- Chain A: H.214, Y.245, H.271
- Chain D: H.214, Y.244, H.268
- Ligands: FE2.2
1 PLIP interactions:1 interactions with chain D- Water bridges: D:K.264
BCT.77: 7 residues within 4Å:- Chain Q: H.214, Y.245, H.271
- Chain T: H.214, Y.244, H.268
- Ligands: FE2.68
3 PLIP interactions:1 interactions with chain T, 2 interactions with chain Q- Hydrogen bonds: T:H.268, Q:Y.245
- Water bridges: Q:S.267
- 8 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Covalent)(Non-covalent)
LHG.12: 25 residues within 4Å:- Chain A: R.139, W.141, I.144, A.145, F.272, A.275, A.276, V.279, V.280, W.283
- Chain C: Y.37, W.40, A.41, W.446, R.450
- Chain D: A.216, Q.219, N.220, K.229, N.230, T.231, F.232
- Ligands: SQD.9, CLA.39, CLA.41
18 PLIP interactions:11 interactions with chain A, 2 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: A:W.141, A:I.144, A:A.145, A:F.272, A:A.275, A:V.279, A:V.280, A:W.283, C:W.40, D:A.216
- Water bridges: A:R.139
- Salt bridges: A:R.139, A:R.139
- Hydrogen bonds: C:R.450, D:N.220, D:T.231, D:T.231, D:F.232
LHG.55: 20 residues within 4Å:- Chain A: Q.232, N.233
- Chain B: Y.6, R.7, F.464, W.468, F.479
- Chain D: Y.141, I.144, W.266, F.269, F.273, V.276, T.277, W.280
- Chain K: F.14, P.18
- Ligands: CLA.23, F6C.25, LHG.62
17 PLIP interactions:8 interactions with chain D, 3 interactions with chain B, 5 interactions with chain A, 1 interactions with chain K- Hydrophobic interactions: D:F.273, D:F.273, D:V.276, D:W.280, B:F.464, K:F.14
- Hydrogen bonds: D:Y.141, A:Q.232, A:Q.232, A:N.233, A:N.233, A:N.233
- Water bridges: D:R.139, D:R.139, D:R.139, B:R.7
- Salt bridges: B:R.7
LHG.56: 22 residues within 4Å:- Chain D: I.256, F.257, I.259, A.260, F.261, S.262, N.263, W.266, F.270
- Chain J: N.16, T.18, S.19, Y.21, L.22, L.25
- Chain M: I.13, L.17, A.20, I.21
- Ligands: CLA.4, PL9.54, LHG.62
15 PLIP interactions:9 interactions with chain D, 4 interactions with chain J, 2 interactions with chain M- Hydrophobic interactions: D:F.257, D:I.259, D:F.261, D:F.270, J:Y.21, J:L.25, M:I.13, M:L.17
- Hydrogen bonds: D:S.262, D:N.263, D:N.263, J:N.16, J:S.19
- Water bridges: D:N.250, D:N.250
LHG.62: 26 residues within 4Å:- Chain A: S.231, N.233
- Chain B: P.4, W.5, Y.6
- Chain D: W.266, F.269, F.270, F.273
- Chain J: E.14, L.15, N.16, S.19, L.22, G.23, V.26, V.29
- Chain K: P.18, F.21, L.22
- Ligands: CLA.23, CLA.26, CL7.49, PL9.54, LHG.55, LHG.56
17 PLIP interactions:4 interactions with chain D, 4 interactions with chain B, 3 interactions with chain A, 5 interactions with chain J, 1 interactions with chain K- Hydrophobic interactions: D:F.269, D:F.270, D:F.273, D:F.273, B:W.5, J:L.22, J:V.29, K:F.21
- Hydrogen bonds: B:W.5, B:W.5, B:Y.6, A:S.231, A:S.231, A:N.233, J:E.14, J:N.16, J:S.19
LHG.78: 25 residues within 4Å:- Chain Q: R.139, W.141, I.144, A.145, F.272, A.275, A.276, V.279, V.280, W.283
- Chain S: Y.37, W.40, A.41, W.446, R.450
- Chain T: A.216, Q.219, N.220, K.229, N.230, T.231, F.232
- Ligands: SQD.75, CLA.105, CLA.107
18 PLIP interactions:5 interactions with chain T, 11 interactions with chain Q, 2 interactions with chain S- Hydrophobic interactions: T:A.216, Q:W.141, Q:I.144, Q:A.145, Q:F.272, Q:A.275, Q:V.279, Q:V.280, Q:W.283, S:W.40
- Hydrogen bonds: T:N.220, T:T.231, T:T.231, T:F.232, S:R.450
- Water bridges: Q:R.139
- Salt bridges: Q:R.139, Q:R.139
LHG.121: 20 residues within 4Å:- Chain 0: F.14, P.18
- Chain Q: Q.232, N.233
- Chain R: Y.6, R.7, F.464, W.468, F.479
- Chain T: Y.141, I.144, W.266, F.269, F.273, V.276, T.277, W.280
- Ligands: CLA.89, F6C.91, LHG.128
17 PLIP interactions:8 interactions with chain T, 3 interactions with chain R, 5 interactions with chain Q, 1 interactions with chain 0- Hydrophobic interactions: T:F.273, T:F.273, T:V.276, T:W.280, R:F.464, 0:F.14
- Hydrogen bonds: T:Y.141, Q:Q.232, Q:Q.232, Q:N.233, Q:N.233, Q:N.233
- Water bridges: T:R.139, T:R.139, T:R.139, R:R.7
- Salt bridges: R:R.7
LHG.122: 22 residues within 4Å:- Chain 2: I.13, L.17, A.20, I.21
- Chain T: I.256, F.257, I.259, A.260, F.261, S.262, N.263, W.266, F.270
- Chain Z: N.16, T.18, S.19, Y.21, L.22, L.25
- Ligands: CLA.70, PL9.120, LHG.128
15 PLIP interactions:9 interactions with chain T, 4 interactions with chain Z, 2 interactions with chain 2- Hydrophobic interactions: T:F.257, T:I.259, T:F.261, T:F.270, Z:Y.21, Z:L.25, 2:I.13, 2:L.17
- Hydrogen bonds: T:S.262, T:N.263, T:N.263, Z:N.16, Z:S.19
- Water bridges: T:N.250, T:N.250
LHG.128: 26 residues within 4Å:- Chain 0: P.18, F.21, L.22
- Chain Q: S.231, N.233
- Chain R: P.4, W.5, Y.6
- Chain T: W.266, F.269, F.270, F.273
- Chain Z: E.14, L.15, N.16, S.19, L.22, G.23, V.26, V.29
- Ligands: CLA.89, CLA.92, CL7.115, PL9.120, LHG.121, LHG.122
17 PLIP interactions:4 interactions with chain R, 5 interactions with chain Z, 4 interactions with chain T, 3 interactions with chain Q, 1 interactions with chain 0- Hydrophobic interactions: R:W.5, Z:L.22, Z:V.29, T:F.269, T:F.270, T:F.273, T:F.273, 0:F.21
- Hydrogen bonds: R:W.5, R:W.5, R:Y.6, Z:E.14, Z:N.16, Z:S.19, Q:S.231, Q:S.231, Q:N.233
- 8 x F6C: Chlorophyll F(Non-covalent)
F6C.16: 26 residues within 4Å:- Chain B: F.33, F.61, L.62, F.65, R.68, L.143, A.146, A.209, V.244, F.245, G.248, A.249, A.252, F.451, H.455, F.458, G.459, W.462
- Ligands: CLA.15, CLA.17, F6C.19, CLA.21, CLA.22, CLA.23, CLA.24, F6C.25
22 PLIP interactions:22 interactions with chain B,- Hydrophobic interactions: B:F.61, B:F.61, B:L.62, B:F.65, B:F.65, B:F.65, B:L.143, B:A.146, B:A.209, B:V.244, B:F.245, B:A.252, B:F.451, B:F.458, B:F.458, B:F.458, B:W.462, B:W.462
- Hydrogen bonds: B:R.68
- Salt bridges: B:R.68
- pi-Stacking: B:F.451
- Metal complexes: B:H.455
F6C.19: 25 residues within 4Å:- Chain B: F.33, M.37, F.40, L.44, G.59, F.61, L.324, F.325, V.327, G.328, R.329, N.447, F.450, F.451, F.454, H.455, F.458
- Chain D: F.196, M.199
- Chain J: F.34
- Ligands: F6C.16, F6C.25, BCR.28, BCR.29, LMG.64
22 PLIP interactions:19 interactions with chain B, 2 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: B:F.33, B:F.33, B:F.40, B:F.61, B:F.61, B:F.61, B:F.325, B:V.327, B:N.447, B:F.450, B:F.450, B:F.454, B:F.454, B:F.454, B:F.458, D:F.196, D:F.196
- Hydrogen bonds: B:G.328
- Salt bridges: B:R.329
- pi-Stacking: B:F.61, B:F.454
- Metal complexes: H2O.6
F6C.25: 17 residues within 4Å:- Chain B: H.9, H.26, L.29, C.30, F.33, F.245, L.461, W.462
- Chain D: M.281
- Ligands: F6C.16, CLA.17, F6C.19, CLA.23, CLA.24, CLA.26, BCR.28, LHG.55
8 PLIP interactions:8 interactions with chain B,- Hydrophobic interactions: B:L.29, B:F.33, B:F.33, B:F.245
- Hydrogen bonds: B:W.462
- Salt bridges: B:H.9, B:H.9
- Metal complexes: B:H.26
F6C.38: 20 residues within 4Å:- Chain C: V.160, A.161, L.164, H.167, I.168, L.171, F.267, W.269, Y.274, Q.277, S.278, N.281, V.282, Q.285
- Ligands: CLA.32, CLA.34, CLA.36, CLA.37, CLA.40, BCR.45
13 PLIP interactions:12 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:V.160, C:A.161, C:L.164, C:L.171, C:F.267, C:W.269, C:W.269, C:Y.274, C:Y.274, C:Q.277, C:N.281
- Hydrogen bonds: C:N.281
- Metal complexes: H2O.8
F6C.82: 26 residues within 4Å:- Chain R: F.33, F.61, L.62, F.65, R.68, L.143, A.146, A.209, V.244, F.245, G.248, A.249, A.252, F.451, H.455, F.458, G.459, W.462
- Ligands: CLA.81, CLA.83, F6C.85, CLA.87, CLA.88, CLA.89, CLA.90, F6C.91
22 PLIP interactions:22 interactions with chain R,- Hydrophobic interactions: R:F.61, R:F.61, R:L.62, R:F.65, R:F.65, R:F.65, R:L.143, R:A.146, R:A.209, R:V.244, R:F.245, R:A.252, R:F.451, R:F.458, R:F.458, R:F.458, R:W.462, R:W.462
- Hydrogen bonds: R:R.68
- Salt bridges: R:R.68
- pi-Stacking: R:F.451
- Metal complexes: R:H.455
F6C.85: 25 residues within 4Å:- Chain R: F.33, M.37, F.40, L.44, G.59, F.61, L.324, F.325, V.327, G.328, R.329, N.447, F.450, F.451, F.454, H.455, F.458
- Chain T: F.196, M.199
- Chain Z: F.34
- Ligands: F6C.82, F6C.91, BCR.94, BCR.95, LMG.130
22 PLIP interactions:19 interactions with chain R, 2 interactions with chain T, 1 Ligand-Water interactions,- Hydrophobic interactions: R:F.33, R:F.33, R:F.40, R:F.61, R:F.61, R:F.61, R:F.325, R:V.327, R:N.447, R:F.450, R:F.450, R:F.454, R:F.454, R:F.454, R:F.458, T:F.196, T:F.196
- Hydrogen bonds: R:G.328
- Salt bridges: R:R.329
- pi-Stacking: R:F.61, R:F.454
- Metal complexes: H2O.17
F6C.91: 17 residues within 4Å:- Chain R: H.9, H.26, L.29, C.30, F.33, F.245, L.461, W.462
- Chain T: M.281
- Ligands: F6C.82, CLA.83, F6C.85, CLA.89, CLA.90, CLA.92, BCR.94, LHG.121
8 PLIP interactions:8 interactions with chain R,- Hydrophobic interactions: R:L.29, R:F.33, R:F.33, R:F.245
- Hydrogen bonds: R:W.462
- Salt bridges: R:H.9, R:H.9
- Metal complexes: R:H.26
F6C.104: 20 residues within 4Å:- Chain S: V.160, A.161, L.164, H.167, I.168, L.171, F.267, W.269, Y.274, Q.277, S.278, N.281, V.282, Q.285
- Ligands: CLA.98, CLA.100, CLA.102, CLA.103, CLA.106, BCR.111
13 PLIP interactions:12 interactions with chain S, 1 Ligand-Water interactions,- Hydrophobic interactions: S:V.160, S:A.161, S:L.164, S:L.171, S:F.267, S:W.269, S:W.269, S:Y.274, S:Y.274, S:Q.277, S:N.281
- Hydrogen bonds: S:N.281
- Metal complexes: H2O.19
- 6 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.46: 23 residues within 4Å:- Chain A: L.90, F.116, L.158, I.162
- Chain C: P.220, T.221, G.222, G.223, E.224, G.225, W.226, V.228, S.229, V.230, N.231, A.291, F.295, N.296, N.297, T.298, D.363, A.364, R.365
17 PLIP interactions:3 interactions with chain A, 14 interactions with chain C- Hydrophobic interactions: A:F.116, A:L.158, A:I.162, C:V.228
- Hydrogen bonds: C:G.223, C:G.223, C:W.226, C:N.297, C:N.297, C:T.298, C:T.298, C:T.298, C:D.363, C:D.363, C:R.365, C:R.365
- Water bridges: C:D.363
DGD.47: 12 residues within 4Å:- Chain A: P.195, M.198, F.299, F.301, S.304
- Chain C: N.408, N.418, N.421
- Chain D: N.72, L.74
- Ligands: CLA.35, LMG.57
9 PLIP interactions:5 interactions with chain A, 2 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: A:P.195, A:F.299, A:F.299, A:F.301, D:L.74
- Hydrogen bonds: A:S.304, C:N.408, C:N.418, D:N.72
DGD.58: 18 residues within 4Å:- Chain B: F.250, G.254, Y.258, Y.273, F.463
- Chain D: H.87, L.89, V.119, I.123, C.154, L.162, W.167, F.291
- Chain G: L.52, Y.55, N.56
- Ligands: CLA.14, CLA.20
15 PLIP interactions:3 interactions with chain G, 10 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: G:L.52, G:Y.55, D:L.89, D:V.119, D:I.123, D:L.162, D:L.162, D:L.162, D:W.167, D:F.291, B:Y.258, B:F.463
- Hydrogen bonds: G:N.56, D:H.87
- Water bridges: D:H.87
DGD.112: 23 residues within 4Å:- Chain Q: L.90, F.116, L.158, I.162
- Chain S: P.220, T.221, G.222, G.223, E.224, G.225, W.226, V.228, S.229, V.230, N.231, A.291, F.295, N.296, N.297, T.298, D.363, A.364, R.365
17 PLIP interactions:14 interactions with chain S, 3 interactions with chain Q- Hydrophobic interactions: S:V.228, Q:F.116, Q:L.158, Q:I.162
- Hydrogen bonds: S:G.223, S:G.223, S:W.226, S:N.297, S:N.297, S:T.298, S:T.298, S:T.298, S:D.363, S:D.363, S:R.365, S:R.365
- Water bridges: S:D.363
DGD.113: 12 residues within 4Å:- Chain Q: P.195, M.198, F.299, F.301, S.304
- Chain S: N.408, N.418, N.421
- Chain T: N.72, L.74
- Ligands: CLA.101, LMG.123
9 PLIP interactions:2 interactions with chain S, 5 interactions with chain Q, 2 interactions with chain T- Hydrogen bonds: S:N.408, S:N.418, Q:S.304, T:N.72
- Hydrophobic interactions: Q:P.195, Q:F.299, Q:F.299, Q:F.301, T:L.74
DGD.124: 18 residues within 4Å:- Chain R: F.250, G.254, Y.258, Y.273, F.463
- Chain T: H.87, L.89, V.119, I.123, C.154, L.162, W.167, F.291
- Chain W: L.52, Y.55, N.56
- Ligands: CLA.80, CLA.86
15 PLIP interactions:3 interactions with chain W, 10 interactions with chain T, 2 interactions with chain R- Hydrophobic interactions: W:L.52, W:Y.55, T:L.89, T:V.119, T:I.123, T:L.162, T:L.162, T:L.162, T:W.167, T:F.291, R:Y.258, R:F.463
- Hydrogen bonds: W:N.56, T:H.87
- Water bridges: T:H.87
- 2 x CL7: CHLOROPHYLL D(Non-covalent)
CL7.49: 21 residues within 4Å:- Chain A: Y.118, T.153, V.156, F.157, L.171, I.175, T.178, F.179, F.181, M.182
- Chain D: M.198, V.201, T.202, L.205
- Chain J: L.33
- Chain M: F.10
- Ligands: CLA.4, PHO.6, CLA.51, PL9.54, LHG.62
9 PLIP interactions:6 interactions with chain A, 1 interactions with chain D, 1 interactions with chain M, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.156, A:L.171, A:F.179, A:F.181, D:V.201, M:F.10
- Hydrogen bonds: A:Y.118, A:T.153
- Metal complexes: H2O.3
CL7.115: 21 residues within 4Å:- Chain 2: F.10
- Chain Q: Y.118, T.153, V.156, F.157, L.171, I.175, T.178, F.179, F.181, M.182
- Chain T: M.198, V.201, T.202, L.205
- Chain Z: L.33
- Ligands: CLA.70, PHO.72, CLA.117, PL9.120, LHG.128
9 PLIP interactions:6 interactions with chain Q, 1 interactions with chain 2, 1 interactions with chain T, 1 Ligand-Water interactions,- Hydrophobic interactions: Q:V.156, Q:L.171, Q:F.179, Q:F.181, 2:F.10, T:V.201
- Hydrogen bonds: Q:Y.118, Q:T.153
- Metal complexes: H2O.14
- 4 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.57: 12 residues within 4Å:- Chain D: F.49, Y.67, G.70, C.71, N.72, F.73
- Chain F: I.36, M.39, Q.40, R.44
- Ligands: DGD.47, BCR.53
9 PLIP interactions:7 interactions with chain D, 2 interactions with chain F- Hydrophobic interactions: D:F.49, D:F.49, D:F.73, D:F.73, D:F.73, D:F.73
- Hydrogen bonds: D:F.73, F:Q.40, F:R.44
LMG.64: 15 residues within 4Å:- Chain B: V.327, G.328, D.332, F.454, F.458
- Chain J: F.38
- Chain K: N.4, K.5, L.6, G.7, A.10, L.13, F.14
- Ligands: F6C.19, BCR.28
15 PLIP interactions:6 interactions with chain K, 7 interactions with chain B, 2 interactions with chain J- Hydrophobic interactions: K:A.10, K:L.13, K:F.14, K:F.14, B:F.458, J:F.38, J:F.38
- Hydrogen bonds: K:N.4, K:K.5, B:D.332, B:D.440, B:D.440
- Water bridges: B:R.329, B:Y.437, B:D.438
LMG.123: 12 residues within 4Å:- Chain T: F.49, Y.67, G.70, C.71, N.72, F.73
- Chain V: I.36, M.39, Q.40, R.44
- Ligands: DGD.113, BCR.119
9 PLIP interactions:2 interactions with chain V, 7 interactions with chain T- Hydrogen bonds: V:Q.40, V:R.44, T:F.73
- Hydrophobic interactions: T:F.49, T:F.49, T:F.73, T:F.73, T:F.73, T:F.73
LMG.130: 15 residues within 4Å:- Chain 0: N.4, K.5, L.6, G.7, A.10, L.13, F.14
- Chain R: V.327, G.328, D.332, F.454, F.458
- Chain Z: F.38
- Ligands: F6C.85, BCR.94
15 PLIP interactions:7 interactions with chain R, 6 interactions with chain 0, 2 interactions with chain Z- Hydrophobic interactions: R:F.458, 0:A.10, 0:L.13, 0:F.14, 0:F.14, Z:F.38, Z:F.38
- Hydrogen bonds: R:D.332, R:D.440, R:D.440, 0:N.4, 0:K.5
- Water bridges: R:R.329, R:Y.437, R:D.438
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
HEM.59: 10 residues within 4Å:- Chain E: H.23, T.26, I.27, L.30
- Chain F: R.18, W.19, H.23, A.26, I.27, V.30
8 PLIP interactions:3 interactions with chain E, 5 interactions with chain F,- Hydrophobic interactions: E:T.26, E:I.27, F:A.26, F:I.27, F:V.30
- Metal complexes: E:H.23
- Salt bridges: F:R.18
- pi-Stacking: F:W.19
HEM.66: 18 residues within 4Å:- Chain O: A.70, C.71, I.73, C.74, H.75, T.80, T.82, N.83, V.86, G.87, L.88, L.106, Y.109, L.110, T.114, Y.116, H.126, P.127
13 PLIP interactions:12 interactions with chain O, 1 interactions with chain N,- Hydrophobic interactions: O:I.73, O:T.80, O:V.86, O:L.88, O:L.106, O:Y.109, O:Y.109, O:L.110, O:P.127
- Hydrogen bonds: O:Y.109, O:Y.109
- Metal complexes: O:H.126
- Salt bridges: N:R.92
HEM.125: 10 residues within 4Å:- Chain U: H.23, T.26, I.27, L.30
- Chain V: R.18, W.19, H.23, A.26, I.27, V.30
8 PLIP interactions:3 interactions with chain U, 5 interactions with chain V,- Hydrophobic interactions: U:T.26, U:I.27, V:A.26, V:I.27, V:V.30
- Metal complexes: U:H.23
- Salt bridges: V:R.18
- pi-Stacking: V:W.19
HEM.132: 18 residues within 4Å:- Chain 4: A.70, C.71, I.73, C.74, H.75, T.80, T.82, N.83, V.86, G.87, L.88, L.106, Y.109, L.110, T.114, Y.116, H.126, P.127
13 PLIP interactions:1 interactions with chain 3, 12 interactions with chain 4,- Salt bridges: 3:R.92
- Hydrophobic interactions: 4:I.73, 4:T.80, 4:V.86, 4:L.88, 4:L.106, 4:Y.109, 4:Y.109, 4:L.110, 4:P.127
- Hydrogen bonds: 4:Y.109, 4:Y.109
- Metal complexes: 4:H.126
- 2 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
RRX.61: 15 residues within 4Å:- Chain B: V.208
- Chain G: M.37, M.40, L.41, A.43, L.44, L.46, F.47, T.50, V.61
- Chain P: M.1, L.5, M.9
- Ligands: CLA.13, CLA.21
9 PLIP interactions:2 interactions with chain P, 6 interactions with chain G, 1 interactions with chain B- Hydrophobic interactions: P:L.5, G:M.40, G:L.41, G:L.44, G:F.47, G:T.50, G:V.61, B:V.208
- Hydrogen bonds: P:M.1
RRX.127: 15 residues within 4Å:- Chain 5: M.1, L.5, M.9
- Chain R: V.208
- Chain W: M.37, M.40, L.41, A.43, L.44, L.46, F.47, T.50, V.61
- Ligands: CLA.79, CLA.87
9 PLIP interactions:6 interactions with chain W, 2 interactions with chain 5, 1 interactions with chain R- Hydrophobic interactions: W:M.40, W:L.41, W:L.44, W:F.47, W:T.50, W:V.61, 5:L.5, R:V.208
- Hydrogen bonds: 5:M.1
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.65: 10 residues within 4Å:- Chain 0: V.20, F.21, L.25
- Chain K: I.27, A.30, S.31
- Chain Z: Q.11, P.12, V.13
- Ligands: CLA.92
8 PLIP interactions:2 interactions with chain 0, 2 interactions with chain Z, 4 interactions with chain K- Hydrophobic interactions: 0:V.20, 0:L.25, K:I.27
- Hydrogen bonds: Z:Q.11, Z:V.13, K:I.27, K:A.30, K:A.30
LMT.131: 10 residues within 4Å:- Chain 0: I.27, A.30, S.31
- Chain J: Q.11, P.12, V.13
- Chain K: V.20, F.21, L.25
- Ligands: CLA.26
8 PLIP interactions:2 interactions with chain K, 2 interactions with chain J, 4 interactions with chain 0- Hydrophobic interactions: K:V.20, K:L.25, 0:I.27
- Hydrogen bonds: J:Q.11, J:V.13, 0:I.27, 0:A.30, 0:A.30
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gisriel, C.J. et al., Structure of a dimeric photosystem II complex from a cyanobacterium acclimated to far-red light. J.Biol.Chem. (2022)
- Release Date
- 2022-12-28
- Peptides
- Photosystem II protein D1: AQ
Photosystem II CP47 reaction center protein: BR
Photosystem II CP43 reaction center protein: CS
Photosystem II D2 protein: DT
Cytochrome b559 subunit alpha: EU
Cytochrome b559 subunit beta: FV
Photosystem II reaction center protein H: GW
Photosystem II reaction center protein I: HX
Photosystem II reaction center protein K: IY
Photosystem II reaction center protein L: JZ
Photosystem II reaction center protein M: K0
Photosystem II manganese-stabilizing polypeptide: L1
Photosystem II reaction center protein T: M2
Photosystem II 12 kDa extrinsic protein: N3
Cytochrome c-550: O4
Photosystem II reaction center X protein: P5 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AQ
aB
BR
bC
CS
cD
DT
dE
EU
eF
FV
fG
HW
hH
IX
iI
KY
kJ
LZ
lK
M0
mL
O1
oM
T2
tN
U3
uO
V4
vP
X5
x - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 60 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
- 14 x BCR: BETA-CAROTENE(Non-covalent)
- 4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Covalent)(Non-covalent)
- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
- 8 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Covalent)(Non-covalent)
- 8 x F6C: Chlorophyll F(Non-covalent)
- 6 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
- 2 x CL7: CHLOROPHYLL D(Non-covalent)
- 4 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
- 2 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gisriel, C.J. et al., Structure of a dimeric photosystem II complex from a cyanobacterium acclimated to far-red light. J.Biol.Chem. (2022)
- Release Date
- 2022-12-28
- Peptides
- Photosystem II protein D1: AQ
Photosystem II CP47 reaction center protein: BR
Photosystem II CP43 reaction center protein: CS
Photosystem II D2 protein: DT
Cytochrome b559 subunit alpha: EU
Cytochrome b559 subunit beta: FV
Photosystem II reaction center protein H: GW
Photosystem II reaction center protein I: HX
Photosystem II reaction center protein K: IY
Photosystem II reaction center protein L: JZ
Photosystem II reaction center protein M: K0
Photosystem II manganese-stabilizing polypeptide: L1
Photosystem II reaction center protein T: M2
Photosystem II 12 kDa extrinsic protein: N3
Cytochrome c-550: O4
Photosystem II reaction center X protein: P5 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AQ
aB
BR
bC
CS
cD
DT
dE
EU
eF
FV
fG
HW
hH
IX
iI
KY
kJ
LZ
lK
M0
mL
O1
oM
T2
tN
U3
uO
V4
vP
X5
x - Membrane
-
We predict this structure to be a membrane protein.