SMTL ID : 7sa3.1

Structure of a monomeric photosystem II core complex from a cyanobacterium acclimated to far-red light

CA.1: 5 residues within 4Å: Chain A: E.190, E.330, E.334 Chain C: P.403, G.405 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:E.190, A:E.330, C:G.405, H2O.5, H2O.7

CL.2: 3 residues within 4Å: Chain A: N.182 Chain D: K.317, L.321 Ligand excluded by PLIP

CLA.3: 32 residues within 4Å: Chain A: Y.120, L.124, Y.148, P.151, V.152, A.154, T.155, S.157, V.158, F.183, M.184, F.185, F.187, Q.188, I.193, L.194, H.199, G.202, V.203, V.206, L.207, I.284, V.287, A.288, I.291 Chain D: L.182, L.205, F.257 Ligands: CL7.4, CLA.5, PHO.6, CLA.49 21 PLIP interactions: 17 interactions with chain A, 4 interactions with chain D, Hydrophobic interactions: A:L.124, A:L.124, A:Y.148, A:V.152, A:A.154, A:F.183, A:F.185, A:F.187, A:Q.188, A:I.193, A:I.193, A:L.194, A:V.203, A:L.207, A:I.284, D:L.182, D:L.182, D:L.205, D:F.257 pi-Cation interactions: A:H.199 Metal complexes: A:H.199 CLA.5: 17 residues within 4Å: Chain A: M.200, V.203, A.204, G.208, L.211 Chain D: Y.153, T.156, F.157, F.173, V.175, I.178, F.179, F.181, L.182 Ligands: CLA.3, PHO.48, CLA.49 14 PLIP interactions: 10 interactions with chain D, 3 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: D:Y.153, D:T.156, D:F.157, D:F.157, D:F.173, D:I.178, D:F.179, D:F.181, D:L.182, D:L.182, A:V.203, A:V.203, A:L.211 Metal complexes: H2O.3 CLA.7: 24 residues within 4Å: Chain A: L.37, P.40, L.41, V.44, F.94, Y.95, P.96, I.97, W.98, Q.114, M.115, F.118, H.119 Chain G: L.4, V.8, Y.9, T.11, V.12, S.13, F.15, V.16, G.17 Ligands: BCR.8, CLA.34 22 PLIP interactions: 14 interactions with chain A, 8 interactions with chain G, Hydrophobic interactions: A:L.37, A:P.40, A:L.41, A:L.41, A:V.44, A:F.94, A:P.96, A:I.97, A:W.98, G:L.4, G:V.8, G:V.8, G:Y.9, G:T.11, G:V.12, G:F.15 Hydrogen bonds: A:I.97, G:Y.9 Salt bridges: A:H.119 pi-Stacking: A:H.119, A:H.119 Metal complexes: A:H.119 CLA.11: 16 residues within 4Å: Chain B: E.184, W.185, G.189, F.190, P.192, G.197, V.198, A.200, H.201, A.204, L.205, V.208, I.251, T.255 Ligands: CLA.12, DGD.26 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:W.185, B:W.185, B:F.190, B:V.198, B:A.200, B:H.201, B:L.205, B:V.208, B:I.251 pi-Stacking: B:F.190, B:H.201 Metal complexes: B:H.201 CLA.12: 22 residues within 4Å: Chain B: R.68, L.69, A.146, L.149, C.150, F.153, L.158, M.166, V.198, H.201, H.202, L.205, V.244, S.247, G.248, I.251, T.255, T.262 Ligands: CLA.11, F6C.13, CLA.14, CLA.15 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:L.69, B:A.146, B:L.149, B:F.153, B:F.153, B:L.205, B:V.244, B:I.251 Hydrogen bonds: B:R.68, B:T.255 Water bridges: B:T.262 Salt bridges: B:R.68 pi-Stacking: B:F.153 Metal complexes: B:H.202 CLA.14: 17 residues within 4Å: Chain B: N.27, C.30, A.31, A.34, L.38, L.62, F.65, V.66, R.68, L.69, H.100, F.103 Ligands: CLA.12, F6C.13, CLA.15, CLA.21, F6C.22 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:N.27, B:A.31, B:A.34, B:L.69, B:F.103, B:F.103 Hydrogen bonds: B:R.68 pi-Stacking: B:H.100, B:H.100 Metal complexes: B:H.100 CLA.15: 18 residues within 4Å: Chain B: L.69, G.70, V.71, W.91, V.96, A.99, H.100, I.102, G.152, F.153, F.156, H.157, F.162, G.163, P.164 Ligands: CLA.12, CLA.14, LMT.28 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:L.69, B:L.69, B:V.71, B:W.91, B:W.91, B:A.99, B:I.102, B:F.153, B:F.156, B:F.162 pi-Stacking: B:H.157, B:H.157 Metal complexes: B:H.157 CLA.17: 21 residues within 4Å: Chain B: G.236, A.239, S.240, A.243, F.246, S.247, F.463, H.466, I.467, L.471 Chain D: W.32, S.33, L.35, L.36, I.123, M.126, L.127, I.130, E.131 Ligands: CLA.19, CLA.50 11 PLIP interactions: 3 interactions with chain D, 8 interactions with chain B, Hydrophobic interactions: D:L.36, D:I.123, D:I.130, B:F.246, B:F.463, B:F.463, B:I.467, B:L.471 Salt bridges: B:H.466 pi-Stacking: B:H.466 Metal complexes: B:H.466 CLA.18: 9 residues within 4Å: Chain B: F.139, L.143, V.208, I.211, G.212, F.215, H.216, R.220 Ligands: CLA.19 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:L.143, B:V.208, B:I.211, B:F.215, B:F.215 Salt bridges: B:H.216, B:R.220 pi-Stacking: B:H.216, B:H.216 Metal complexes: B:H.216 CLA.19: 10 residues within 4Å: Chain B: L.135, F.139, H.142, L.143, T.237, V.244, F.245 Ligands: CLA.17, CLA.18, CLA.21 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:L.135, B:L.135 Salt bridges: B:H.142 CLA.20: 15 residues within 4Å: Chain B: R.7, V.8, H.9, T.10, L.238, L.242, L.461, W.462, F.464, G.465, W.468, H.469, R.472 Ligands: CLA.21, F6C.22 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:H.9, B:T.10, B:L.242, B:W.462, B:F.464, B:W.468 Hydrogen bonds: B:H.9 Salt bridges: B:R.7, B:H.9, B:R.472 pi-Stacking: B:W.468, B:H.469, B:H.469 pi-Cation interactions: B:R.7 Metal complexes: B:H.469 CLA.21: 21 residues within 4Å: Chain B: H.9, V.12, L.13, L.19, V.22, H.23, H.26, N.27, C.30, I.234, T.237, L.238, G.241, L.242, F.245 Ligands: F6C.13, CLA.14, CLA.19, CLA.20, F6C.22, CLA.23 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:V.12, B:L.13, B:L.19, B:V.22, B:H.23, B:H.26, B:I.234, B:I.234, B:T.237, B:L.238, B:L.238 Salt bridges: B:H.23 pi-Stacking: B:H.23, B:H.23 Metal complexes: B:H.23 CLA.23: 12 residues within 4Å: Chain B: L.19, I.20, H.23, I.24, N.27, F.103, V.138, I.141, H.142, L.145 Ligands: CLA.21, CLA.24 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:L.19, B:I.20, B:F.103, B:V.138, B:I.141, B:L.145, B:L.145 pi-Stacking: B:H.142 CLA.24: 7 residues within 4Å: Chain B: I.20, I.24, A.110, W.113, H.114, V.120 Ligands: CLA.23 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:I.20, B:I.24, B:I.24, B:A.110, B:W.113, B:V.120 pi-Stacking: B:W.113, B:W.113 Metal complexes: B:H.114 CLA.30: 25 residues within 4Å: Chain C: T.100, L.101, L.171, F.174, A.175, F.178, L.188, I.227, I.236, H.240, I.243, L.247, N.281, G.284, Q.285, I.288, F.292, A.299, Y.300 Ligands: CLA.31, CLA.32, CLA.34, F6C.36, BCR.43, DGD.44 17 PLIP interactions: 17 interactions with chain C, Hydrophobic interactions: C:L.171, C:F.174, C:A.175, C:F.178, C:I.227, C:I.243, C:I.243, C:L.247, C:I.288, C:F.292, C:A.299, C:Y.300 pi-Stacking: C:F.178, C:F.178, C:H.240 pi-Cation interactions: C:H.240 Metal complexes: C:H.240 CLA.31: 23 residues within 4Å: Chain C: W.69, I.93, L.94, H.97, L.171, F.174, K.181, V.282, Q.285, A.286, A.289, I.293, Y.300, L.429, H.433, F.436, F.440 Ligands: CLA.30, CLA.32, CLA.33, CLA.38, CLA.39, CLA.41 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:W.69, C:I.93, C:L.94, C:L.171, C:K.181, C:V.282, C:Q.285, C:A.286, C:A.289, C:L.429, C:F.436, C:F.436, C:F.440, C:F.440 Hydrogen bonds: C:Y.300 Salt bridges: C:H.97, C:H.433 pi-Stacking: C:H.433 Metal complexes: C:H.433 CLA.32: 21 residues within 4Å: Chain C: A.63, V.66, A.67, W.69, A.70, L.74, L.94, H.97, I.98, L.101, I.120, H.124, L.131, F.174, V.282, Q.285 Ligands: CLA.30, CLA.31, F6C.36, CLA.38, CLA.39 12 PLIP interactions: 12 interactions with chain C, Hydrophobic interactions: C:V.66, C:A.67, C:W.69, C:A.70, C:I.98, C:L.101, C:L.131, C:F.174, C:V.282 Salt bridges: C:H.124 pi-Stacking: C:H.124 Metal complexes: C:H.124 CLA.33: 21 residues within 4Å: Chain C: W.69, M.73, F.76, E.77, Q.90, G.91, I.93, W.428, L.429, A.432, H.433, F.436 Chain H: P.25, I.26, I.29 Chain I: X.18, X.19 Ligands: LMT.10, CLA.31, CLA.39, LMT.45 14 PLIP interactions: 3 interactions with chain H, 10 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: H:P.25, H:I.26, H:I.29, C:F.76, C:I.93, C:W.428, C:W.428, C:W.428, C:W.428, C:L.429, C:A.432, C:F.436 pi-Stacking: C:W.428 Metal complexes: H2O.6 CLA.34: 24 residues within 4Å: Chain A: F.34, L.37, P.122, L.125, C.126, L.128, G.129, W.132 Chain C: F.267, T.273, S.276, Q.277, G.280, L.441, H.444, L.445, A.448, R.452 Chain G: F.23 Ligands: CLA.7, CLA.30, F6C.36, BCR.43, DGD.44 19 PLIP interactions: 9 interactions with chain A, 1 interactions with chain G, 9 interactions with chain C, Hydrophobic interactions: A:F.34, A:P.122, A:L.125, A:L.125, A:L.128, A:W.132, A:W.132, A:W.132, G:F.23, C:Q.277, C:L.441, C:L.441, C:L.445 pi-Stacking: A:W.132 Hydrogen bonds: C:Q.277, C:R.452 Salt bridges: C:R.452 pi-Cation interactions: C:H.444 Metal complexes: C:H.444 CLA.35: 17 residues within 4Å: Chain C: L.164, I.168, I.246, A.249, G.250, W.253, H.254, V.257, P.258, P.259, L.260, W.262, T.263, L.266 Chain G: I.20 Ligands: F6C.36, BCR.43 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain G, Hydrophobic interactions: C:L.164, C:I.168, C:I.168, C:I.246, C:W.253, C:W.262, C:T.263, G:I.20 Hydrogen bonds: C:L.260, C:T.263 pi-Stacking: C:H.254 pi-Cation interactions: C:H.254 Metal complexes: C:H.254 CLA.37: 21 residues within 4Å: Chain C: Y.37, W.40, A.41, G.42, N.43, A.44, L.275, L.279, F.439, F.440, V.442, G.443, W.446, H.447, R.450 Chain H: L.32, F.36 Ligands: CLA.38, CLA.39, CLA.40, LHG.53 17 PLIP interactions: 16 interactions with chain C, 1 interactions with chain H, Hydrophobic interactions: C:A.44, C:L.275, C:L.279, C:F.440, C:F.440, C:V.442, C:W.446, H:F.36 Hydrogen bonds: C:N.43, C:N.43, C:A.44 Salt bridges: C:H.447, C:R.450 pi-Stacking: C:W.446, C:H.447, C:H.447 Metal complexes: C:H.447 CLA.38: 24 residues within 4Å: Chain C: N.43, L.46, I.47, F.55, A.58, H.59, H.62, F.152, W.154, V.160, G.271, E.272, Y.274, L.275, S.278, L.279, V.282 Ligands: CLA.31, CLA.32, F6C.36, CLA.37, CLA.39, CLA.40, CLA.41 17 PLIP interactions: 17 interactions with chain C, Hydrophobic interactions: C:N.43, C:L.46, C:F.55, C:F.55, C:F.55, C:A.58, C:H.62, C:F.152, C:W.154, C:W.154, C:W.154, C:V.160, C:Y.274 Hydrogen bonds: C:S.278 pi-Stacking: C:F.55 pi-Cation interactions: C:H.59 Metal complexes: C:H.59 CLA.39: 16 residues within 4Å: Chain C: N.43, H.62, L.65, V.66, W.69, F.439, F.440 Chain H: P.28, I.29, L.32 Ligands: CLA.31, CLA.32, CLA.33, CLA.37, CLA.38, CLA.40 12 PLIP interactions: 4 interactions with chain H, 8 interactions with chain C, Hydrophobic interactions: H:P.28, H:I.29, H:L.32, H:L.32, C:L.65, C:V.66, C:W.69, C:F.439, C:F.440 Hydrogen bonds: C:N.43 pi-Stacking: C:H.62