SMTL ID : 8er6.2 (2 other biounits)

FKBP12-FRB in Complex with Compound 11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x XYU: (3S,5R,6R,7E,9R,10R,12R,14S,15E,17E,19E,21S,23S,26R,27R,30R,34aS)-5,9,27-trihydroxy-3-{(2R)-1-[(1S,3R,4R)-4-hydroxy-3-methoxycyclohexyl]propan-2-yl}-10,21-dimethoxy-6,8,12,14,20,26-hexamethyl-5,6,9,10,12,13,14,21,22,23,24,25,26,27,32,33,34,34a-octadecahydro-3H-23,27-epoxypyrido[2,1-c][1,4]oxazacyclohentriacontine-1,11,28,29(4H,31H)-tetrone(Non-covalent)

XYU.1: 23 residues within 4Å: Chain A: Y.26, F.36, D.37, F.46, Q.53, E.54, V.55, I.56, W.59, Y.82, I.90, I.91, F.99 Chain B: L.14, E.15, S.18, R.19, F.22, T.81, W.84, D.85, Y.88, F.91 28 PLIP interactions: 15 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:Y.26, A:F.36, A:F.46, A:V.55, A:I.56, A:W.59, A:W.59, A:Y.82, A:I.90, A:I.91, B:L.14, B:F.22, B:F.22, B:F.22, B:F.22, B:F.22, B:W.84, B:Y.88, B:Y.88, B:Y.88, B:F.91, B:F.91 Hydrogen bonds: A:Y.26, A:D.37, A:E.54, A:I.56, A:Y.82, B:S.18

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain B: L.5, W.6, H.7, K.49, E.50 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.6, B:H.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burnett, G.L. et al., Discovery of RMC-5552, a Selective Bi-Steric Inhibitor of mTORC1, for the Treatment of mTORC1-Activated Tumors. J.Med.Chem. (2023)

Release Date

2022-12-28

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A
non-specific serine/threonine protein kinase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peptidyl-prolyl cis-trans isomerase FKBP1A

non-specific serine/threonine protein kinase

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