SMTL ID : 8f3m.1

Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant with S466 insertion apo form from Enterococcus faecium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.461, E.462, K.463 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: N.256, K.276, R.279 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: S.268, G.269 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: V.558, P.559, R.562, P.610 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.146, N.147 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: N.414, G.415, L.416, K.417 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: G.550, E.551, T.552 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: Q.193, S.362, Q.363, E.364 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: D.544, K.545, K.546 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: D.435, V.436, S.437, Q.438 Ligand excluded by PLIP SO4.11: 1 residues within 4Å: Chain A: N.306 Ligand excluded by PLIP SO4.12: 1 residues within 4Å: Chain A: W.418 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain A: S.69, N.70 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain A: K.540, E.541 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain A: S.46, E.47 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain A: D.611, N.612, Q.646 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain A: S.423, W.424, S.497, D.498, I.499 Ligand excluded by PLIP SO4.18: 1 residues within 4Å: Chain A: G.171 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hunashal, Y. et al., The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics. Nat Commun (2023)

Release Date

2023-07-05

Peptides

Penicillin binding protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin binding protein 5

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