SMTL ID : 8f3n.1

Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant with S466 insertion penicillin bound form from Enterococcus faecium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

monomer

Ligands

1 x PNM: OPEN FORM - PENICILLIN G(Covalent)

PNM.1: 11 residues within 4Å: Chain A: G.388, S.389, V.432, S.448, N.450, T.571, T.586, G.587, T.588, E.590, E.601 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.432, A:T.571, A:T.588, A:E.590 Hydrogen bonds: A:S.389, A:S.448, A:N.450, A:T.586, A:T.588, A:T.588, A:T.588, A:T.588 Salt bridges: A:K.585

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.461, E.462, K.463 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: S.268, G.269, S.483 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: N.256, K.276, R.279 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.146, N.147 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: G.550, E.551, T.552 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: G.415, L.416, K.417 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: D.435, V.436, S.437, Q.438 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: D.544, K.545, K.546 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: W.418, Q.455 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain A: K.540, E.541 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain A: N.612, Q.646 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain A: N.306 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain A: S.36, K.37, K.38, S.46, E.47 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain A: T.571, S.574, S.629, K.632 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain A: S.69, N.70, L.71 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain A: K.30 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain A: N.402, K.464, T.467 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain A: V.558, P.559, R.562, P.610 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain A: E.476, D.477 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hunashal, Y. et al., The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics. Nat Commun (2023)

Release Date

2023-07-05

Peptides

Penicillin binding protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin binding protein 5

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