SMTL ID : 8f9v.3 (3 other biounits)

Crystal structure of Ky15.8 Fab in complex with circumsporozoite protein KQPA peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: R.16, S.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.17 Water bridges: A:R.16, A:S.17 EDO.2: 6 residues within 4Å: Chain A: Q.39, A.40, P.41, T.91, A.92, V.93 No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: K.138 Chain B: K.206 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.138, B:K.206 EDO.4: 2 residues within 4Å: Chain B: R.18, S.76 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.18, B:S.76, B:S.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thai, E. et al., Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein. Cell Rep (2023)

Release Date

2023-11-01

Peptides

Ky15.8 Antibody, heavy chain: A
Ky15.8 Antibody, light chain: B
Circumsporozoite protein KQPA peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
O

Ky15.8 Antibody, heavy chain

Ky15.8 Antibody, light chain

Circumsporozoite protein KQPA peptide

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