SMTL ID : 8f9w.2 (3 other biounits)

Crystal structure of Ky15.8 Fab in complex with circumsporozoite protein NPDP peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain B: R.16, S.17 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.17 EDO.2: 4 residues within 4Å: Chain B: P.14, R.87, A.88, E.89 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.88 EDO.3: 2 residues within 4Å: Chain B: K.138 Chain C: K.206 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.138, B:K.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thai, E. et al., Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein. Cell Rep (2023)

Release Date

2023-11-01

Peptides

Circumsporozoite protein NPDP peptide: A
Ky15.8 Antibody, heavy chain: B
Ky15.8 Antibody, light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
C

C
D

Circumsporozoite protein NPDP peptide

Ky15.8 Antibody, heavy chain

Ky15.8 Antibody, light chain

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