SMTL ID : 8fas.1

Crystal structure of Ky230 Fab in complex with circumsporozoite protein NANP5 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-1-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.121, F.153, G.181, L.182 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.122 EDO.2: 7 residues within 4Å: Chain A: A.100, S.101, S.102, S.105 Chain B: R.51, Y.54, K.55 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.102, A:S.102, A:S.105, B:R.51, B:R.51 Water bridges: A:S.101 EDO.3: 6 residues within 4Å: Chain A: L.148, V.176, S.184, L.185, S.186 Chain B: T.183 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.165 Water bridges: B:S.181, B:T.183, B:T.183, A:S.184 EDO.4: 6 residues within 4Å: Chain A: D.108, Y.109 Chain B: R.50, R.51, D.60, S.61 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.109, B:R.51 Water bridges: B:D.60 EDO.5: 5 residues within 4Å: Chain B: R.147, E.148, A.149, E.166, L.180 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.147, B:E.166 EDO.6: 5 residues within 4Å: Chain A: S.139 Chain B: P.118, S.119, V.120, K.212 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.118, B:V.120, B:K.212, B:K.212 EDO.7: 5 residues within 4Å: Chain B: E.148, K.150, T.202, H.203, Q.204 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thai, E. et al., Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein. Cell Rep (2023)

Release Date

2023-11-01

Peptides

Ky230 Antibody, heavy chain: A
Ky230 Antibody, light chain: B
Circumsporozoite protein NANP5 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ky230 Antibody, heavy chain

Ky230 Antibody, light chain

Circumsporozoite protein NANP5 peptide

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