SMTL ID : 8fav.1 (1 other biounit)

HUMAN RETENOID-RELATED ORPHAN RECEPTOR-GAMMA (RORC2) LIGAND-BINDING DOMAIN IN COMPLEX WITH COMPOUND 5 ANDINDAZOLE ACID BOUND IN H12-POCKET

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x LKY: 3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide(Non-covalent)

LKY.1: 22 residues within 4Å: Chain A: Q.31, L.32, L.37, C.65, H.68, L.69, M.110, R.112, A.113, V.121, F.122, F.123, F.133, L.136, L.141, I.142, I.145, F.146, S.149, H.224, L.228, F.231 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.69, A:M.110, A:A.113, A:V.121, A:V.121, A:V.121, A:F.122, A:F.123, A:F.133, A:L.136, A:L.141, A:I.142, A:I.145, A:L.228, A:F.231 Hydrogen bonds: A:L.32, A:R.112, A:F.122 pi-Cation interactions: A:H.68 Halogen bonds: A:S.149

1 x 4Y5: 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-4-fluoro-1H-indazol-3-yl}-3-fluorobenzoic acid(Non-covalent)

4Y5.2: 20 residues within 4Å: Chain A: W.62, A.66, L.69, T.70, I.73, Q.74, L.98, K.99, A.102, M.103, L.228, Q.229, Q.232, A.241, A.242, F.243, L.246, Y.247, L.250, F.251 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.62, A:T.70, A:I.73, A:A.102, A:Y.247, A:L.250, A:F.251, A:F.251 Hydrogen bonds: A:Q.74, A:A.242, A:F.243, A:F.243

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: L.199, H.203, R.204, Q.205, S.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.205, A:Q.205, A:S.206 Salt bridges: A:H.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnute, M.E. et al., Macrocyclic Retinoic Acid Receptor-Related Orphan Receptor C2 Inverse Agonists. Acs Med.Chem.Lett. (2023)

Release Date

2023-03-01

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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