SMTL ID : 8fb2.1 (1 other biounit)

HUMAN RETENOID-RELATED ORPHAN RECEPTOR-GAMMA (RORC2) LIGAND-BINDING DOMAIN IN COMPLEX WITH COMPOUND 8 ANDINDAZOLE ACID BOUND IN H12-POCKET

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x XO5: (1R,15S)-16-(cyclopropylacetyl)-5-fluoro-20-methyl-9lambda~6~-thia-1,8,16-triazatricyclo[13.3.1.1~3,7~]icosa-3(20),4,6-triene-9,9-dione(Non-covalent)

XO5.1: 20 residues within 4Å: Chain A: C.65, H.68, L.69, M.110, A.113, V.121, F.122, F.123, F.133, L.136, C.138, L.141, I.142, I.145, F.146, S.149, H.224, R.227, L.228, F.231 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.68, A:L.69, A:M.110, A:V.121, A:F.123, A:F.133, A:L.136, A:L.141, A:I.145, A:L.228, A:F.231 Hydrogen bonds: A:F.122 Halogen bonds: A:S.149

1 x XNX: 4-[1-(2,6-dichlorobenzoyl)-4-fluoro-1H-indazol-3-yl]benzoic acid(Non-covalent)

XNX.2: 19 residues within 4Å: Chain A: W.62, A.66, L.69, T.70, I.73, Q.74, L.98, K.99, A.102, M.103, L.228, Q.229, A.241, A.242, F.243, L.246, Y.247, L.250, F.251 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.62, A:A.66, A:I.73, A:A.102, A:L.246, A:L.250, A:L.250, A:L.250, A:F.251, A:F.251 Hydrogen bonds: A:Q.74, A:A.242, A:F.243, A:F.243 Halogen bonds: A:Q.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnute, M.E. et al., Macrocyclic Retinoic Acid Receptor-Related Orphan Receptor C2 Inverse Agonists. Acs Med.Chem.Lett. (2023)

Release Date

2023-03-01

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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