SMTL ID : 8fay.1 (1 other biounit)

Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 15 residues within 4Å: Chain A: V.182, R.185, V.186, L.225, V.229, C.230, P.235, C.237, C.240, V.242, E.243, C.246, A.248, R.249, V.295 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.230, A:C.237, A:C.240, A:C.246

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.124, R.125, E.128, P.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.128 Salt bridges: A:R.124, A:R.125 SO4.3: 5 residues within 4Å: Chain A: A.105, S.106, L.107, Q.127, R.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.107 Water bridges: A:E.108 Salt bridges: A:R.131 SO4.4: 2 residues within 4Å: Chain A: L.63, R.66 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.66 Salt bridges: A:R.66 SO4.5: 3 residues within 4Å: Chain A: R.251, P.288, W.289 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.289 Salt bridges: A:R.251 SO4.6: 7 residues within 4Å: Chain A: L.26, F.27, R.28, D.29, E.32, R.187, R.247 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.28, A:D.29 Salt bridges: A:R.187, A:R.247 SO4.7: 3 residues within 4Å: Chain A: H.422, K.431, R.435 4 PLIP interactions: 4 interactions with chain A Water bridges: A:H.422, A:R.435 Salt bridges: A:K.431, A:R.435 SO4.8: 2 residues within 4Å: Chain A: R.234 Chain B: C.11 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.234, A:R.234 Salt bridges: A:R.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trasvina-Arenas, C.H., Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G). To Be Published

Release Date

2024-05-29

Peptides

Adenine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenine DNA glycosylase

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