SMTL ID : 8fay.2 (1 other biounit)

Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 14 residues within 4Å: Chain A: V.182, R.185, V.186, L.225, V.229, C.230, P.235, C.237, C.240, V.242, E.243, C.246, R.249, V.295 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.230, A:C.237, A:C.240, A:C.246

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.234 Chain B: C.11 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.234, A:R.234, A:R.234 Salt bridges: A:R.234 SO4.3: 4 residues within 4Å: Chain A: R.124, R.125, E.128 Chain C: T.11 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.124, A:R.125 SO4.4: 3 residues within 4Å: Chain A: H.25, L.26, R.187 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.187, A:R.247 Salt bridges: A:R.187 SO4.5: 8 residues within 4Å: Chain A: V.330, Q.331, R.332, P.333, E.343, E.363, R.366, W.367 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.343, A:E.363, A:R.366 Water bridges: A:E.363, A:E.363 SO4.6: 3 residues within 4Å: Chain A: S.106, L.107, R.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.107 Water bridges: A:S.106, A:E.108 Salt bridges: A:R.131 SO4.7: 5 residues within 4Å: Chain A: Q.79, D.176, G.177 Chain C: G.8, T.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.175, A:G.177 Water bridges: A:Q.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trasvina-Arenas, C.H., Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G). To Be Published

Release Date

2024-05-29

Peptides

Adenine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Adenine DNA glycosylase

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