SMTL ID : 8fb7.1 (1 other biounit)

Crystal structure of Ky15.10 Fab in complex with circumsporozoite protein NPDP peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: S.168, G.169 No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: G.15, R.16, S.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.16, A:S.17, A:S.17 EDO.3: 2 residues within 4Å: Chain B: K.39, D.81 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.39 Water bridges: B:K.39 EDO.4: 4 residues within 4Å: Chain B: E.142, A.143, K.144 Ligands: EDO.5 5 PLIP interactions: 5 interactions with chain B Water bridges: B:A.143, B:A.143, B:A.143, B:E.160, B:E.160 EDO.5: 6 residues within 4Å: Chain B: E.142, A.143, K.144, T.196, Q.198 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.142 Water bridges: B:Q.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thai, E. et al., Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein. Cell Rep (2023)

Release Date

2023-11-01

Peptides

Ky15.10 Antibody, Heavy Chain: A
Ky15.10 Antibody, Light chain: B
Circumsporozoite protein NPDP peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
Q

Ky15.10 Antibody, Heavy Chain

Ky15.10 Antibody, Light chain

Circumsporozoite protein NPDP peptide

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