- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-8-8-8-8-mer
- Ligands
- 48 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)(Non-functional Binders)
- 16 x LYC: LYCOPENE(Non-covalent)
LYC.3: 15 residues within 4Å:- Chain A: A.30, I.31, H.34
- Chain M: K.8, I.9, L.11
- Chain O: A.26, F.36
- Chain P: A.15, V.16, Q.19, F.20, T.23
- Ligands: BCL.4, BCL.26
9 PLIP interactions:2 interactions with chain A, 3 interactions with chain P, 2 interactions with chain O, 2 interactions with chain M- Hydrophobic interactions: A:A.30, A:H.34, P:A.15, P:Q.19, P:T.23, O:A.26, O:F.36, M:K.8, M:L.11
LYC.5: 13 residues within 4Å:- Chain A: A.26, F.36
- Chain B: A.15, V.16, Q.19, F.20, T.23
- Chain C: A.30, I.31, H.34
- Chain O: L.11
- Ligands: BCL.8, BCL.30
8 PLIP interactions:3 interactions with chain B, 2 interactions with chain C, 1 interactions with chain O, 2 interactions with chain A- Hydrophobic interactions: B:A.15, B:Q.19, B:T.23, C:A.30, C:H.34, O:L.11, A:A.26, A:F.36
LYC.11: 15 residues within 4Å:- Chain E: A.30, I.31, H.34
- Chain I: K.8, I.9, L.11
- Chain K: A.26, F.36
- Chain L: A.15, V.16, Q.19, F.20, T.23
- Ligands: BCL.12, BCL.18
9 PLIP interactions:2 interactions with chain E, 3 interactions with chain L, 2 interactions with chain I, 2 interactions with chain K- Hydrophobic interactions: E:A.30, E:H.34, L:A.15, L:Q.19, L:T.23, I:K.8, I:L.11, K:A.26, K:F.36
LYC.13: 13 residues within 4Å:- Chain E: A.26, F.36
- Chain F: A.15, V.16, Q.19, F.20, T.23
- Chain G: A.30, I.31, H.34
- Chain K: L.11
- Ligands: BCL.16, BCL.22
8 PLIP interactions:3 interactions with chain F, 2 interactions with chain G, 2 interactions with chain E, 1 interactions with chain K- Hydrophobic interactions: F:A.15, F:Q.19, F:T.23, G:A.30, G:H.34, E:A.26, E:F.36, K:L.11
LYC.17: 15 residues within 4Å:- Chain A: K.8, I.9, L.11
- Chain C: A.26, F.36
- Chain D: A.15, V.16, Q.19, F.20, T.23
- Chain I: A.30, I.31, H.34
- Ligands: BCL.1, BCL.20
9 PLIP interactions:2 interactions with chain A, 3 interactions with chain D, 2 interactions with chain I, 2 interactions with chain C- Hydrophobic interactions: A:K.8, A:L.11, D:A.15, D:Q.19, D:T.23, I:A.30, I:H.34, C:A.26, C:F.36
LYC.21: 13 residues within 4Å:- Chain C: L.11
- Chain I: A.26, F.36
- Chain J: A.15, V.16, Q.19, F.20, T.23
- Chain K: A.30, I.31, H.34
- Ligands: BCL.6, BCL.24
8 PLIP interactions:3 interactions with chain J, 2 interactions with chain I, 2 interactions with chain K, 1 interactions with chain C- Hydrophobic interactions: J:A.15, J:Q.19, J:T.23, I:A.26, I:F.36, K:A.30, K:H.34, C:L.11
LYC.25: 15 residues within 4Å:- Chain E: K.8, I.9, L.11
- Chain G: A.26, F.36
- Chain H: A.15, V.16, Q.19, F.20, T.23
- Chain M: A.30, I.31, H.34
- Ligands: BCL.9, BCL.28
9 PLIP interactions:3 interactions with chain H, 2 interactions with chain M, 2 interactions with chain G, 2 interactions with chain E- Hydrophobic interactions: H:A.15, H:Q.19, H:T.23, M:A.30, M:H.34, G:A.26, G:F.36, E:K.8, E:L.11
LYC.29: 13 residues within 4Å:- Chain G: L.11
- Chain M: A.26, F.36
- Chain N: A.15, V.16, Q.19, F.20, T.23
- Chain O: A.30, I.31, H.34
- Ligands: BCL.14, BCL.32
8 PLIP interactions:2 interactions with chain M, 2 interactions with chain O, 3 interactions with chain N, 1 interactions with chain G- Hydrophobic interactions: M:A.26, M:F.36, O:A.30, O:H.34, N:A.15, N:Q.19, N:T.23, G:L.11
LYC.35: 14 residues within 4Å:- Chain 2: K.8, I.9, L.11
- Chain 4: A.26
- Chain 5: A.15, V.16, Q.19, F.20, T.23
- Chain Q: A.30, I.31, H.34
- Ligands: BCL.36, BCL.58
8 PLIP interactions:2 interactions with chain 2, 3 interactions with chain 5, 2 interactions with chain Q, 1 interactions with chain 4- Hydrophobic interactions: 2:K.8, 2:L.11, 5:A.15, 5:Q.19, 5:T.23, Q:A.30, Q:H.34, 4:A.26
LYC.37: 12 residues within 4Å:- Chain 4: L.11
- Chain Q: A.26
- Chain R: A.15, V.16, Q.19, F.20, T.23
- Chain S: A.30, I.31, H.34
- Ligands: BCL.40, BCL.62
7 PLIP interactions:1 interactions with chain Q, 2 interactions with chain S, 3 interactions with chain R, 1 interactions with chain 4- Hydrophobic interactions: Q:A.26, S:A.30, S:H.34, R:A.15, R:Q.19, R:T.23, 4:L.11
LYC.41: 14 residues within 4Å:- Chain Q: K.8, I.9, L.11
- Chain S: A.26
- Chain T: A.15, V.16, Q.19, F.20, T.23
- Chain U: A.30, I.31, H.34
- Ligands: BCL.33, BCL.44
8 PLIP interactions:3 interactions with chain T, 2 interactions with chain Q, 1 interactions with chain S, 2 interactions with chain U- Hydrophobic interactions: T:A.15, T:Q.19, T:T.23, Q:K.8, Q:L.11, S:A.26, U:A.30, U:H.34
LYC.45: 12 residues within 4Å:- Chain S: L.11
- Chain U: A.26
- Chain V: A.15, V.16, Q.19, F.20, T.23
- Chain W: A.30, I.31, H.34
- Ligands: BCL.38, BCL.48
7 PLIP interactions:1 interactions with chain S, 2 interactions with chain W, 3 interactions with chain V, 1 interactions with chain U- Hydrophobic interactions: S:L.11, W:A.30, W:H.34, V:A.15, V:Q.19, V:T.23, U:A.26
LYC.49: 14 residues within 4Å:- Chain U: K.8, I.9, L.11
- Chain W: A.26
- Chain X: A.15, V.16, Q.19, F.20, T.23
- Chain Y: A.30, I.31, H.34
- Ligands: BCL.42, BCL.52
8 PLIP interactions:3 interactions with chain X, 1 interactions with chain W, 2 interactions with chain Y, 2 interactions with chain U- Hydrophobic interactions: X:A.15, X:Q.19, X:T.23, W:A.26, Y:A.30, Y:H.34, U:K.8, U:L.11
LYC.53: 12 residues within 4Å:- Chain 0: A.30, I.31, H.34
- Chain W: L.11
- Chain Y: A.26
- Chain Z: A.15, V.16, Q.19, F.20, T.23
- Ligands: BCL.46, BCL.56
7 PLIP interactions:3 interactions with chain Z, 2 interactions with chain 0, 1 interactions with chain Y, 1 interactions with chain W- Hydrophobic interactions: Z:A.15, Z:Q.19, Z:T.23, 0:A.30, 0:H.34, Y:A.26, W:L.11
LYC.57: 14 residues within 4Å:- Chain 0: A.26
- Chain 1: A.15, V.16, Q.19, F.20, T.23
- Chain 2: A.30, I.31, H.34
- Chain Y: K.8, I.9, L.11
- Ligands: BCL.50, BCL.60
8 PLIP interactions:2 interactions with chain Y, 3 interactions with chain 1, 2 interactions with chain 2, 1 interactions with chain 0- Hydrophobic interactions: Y:K.8, Y:L.11, 1:A.15, 1:Q.19, 1:T.23, 2:A.30, 2:H.34, 0:A.26
LYC.61: 12 residues within 4Å:- Chain 0: L.11
- Chain 2: A.26
- Chain 3: A.15, V.16, Q.19, F.20, T.23
- Chain 4: A.30, I.31, H.34
- Ligands: BCL.54, BCL.64
7 PLIP interactions:1 interactions with chain 2, 2 interactions with chain 4, 3 interactions with chain 3, 1 interactions with chain 0- Hydrophobic interactions: 2:A.26, 4:A.30, 4:H.34, 3:A.15, 3:Q.19, 3:T.23, 0:L.11
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, D. et al., Elucidating interprotein energy transfer dynamics within the antenna network from purple bacteria. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2023-07-19
- Peptides
- Light-harvesting protein B800-820 alpha chain: ACEGIKMO
Light-harvesting protein B800-820 beta chain: BDFHJLNP
Light-harvesting protein B-800/850 alpha chain: QSUWY024
Light-harvesting protein B-800/850 beta 1 chain: RTVXZ135 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
CG
GI
IK
KM
cO
eB
BD
EF
FH
HJ
JL
LN
dP
fQ
MS
OU
QW
SY
U0
W2
Y4
aR
NT
PV
RX
TZ
V1
X3
Z5
b - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-8-8-8-8-mer
- Ligands
- 48 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)(Non-functional Binders)
- 16 x LYC: LYCOPENE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, D. et al., Elucidating interprotein energy transfer dynamics within the antenna network from purple bacteria. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2023-07-19
- Peptides
- Light-harvesting protein B800-820 alpha chain: ACEGIKMO
Light-harvesting protein B800-820 beta chain: BDFHJLNP
Light-harvesting protein B-800/850 alpha chain: QSUWY024
Light-harvesting protein B-800/850 beta 1 chain: RTVXZ135 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
CG
GI
IK
KM
cO
eB
BD
EF
FH
HJ
JL
LN
dP
fQ
MS
OU
QW
SY
U0
W2
Y4
aR
NT
PV
RX
TZ
V1
X3
Z5
b - Membrane
-
We predict this structure to be a membrane protein.