SMTL ID : 8fh6.1

Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And Two AT-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 33 residues within 4Å: Chain A: G.19, T.20, W.21, K.22, D.44, Y.49, K.78, H.111, W.112, S.160, N.161, Q.184, Y.210, S.211, P.212, L.213, G.214, S.215, P.216, D.217, L.229, A.246, I.261, P.262, K.263, S.264, V.265, T.266, R.269, E.272, N.273, C.299 Ligands: XXQ.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:W.21, A:Y.210, A:Y.210, A:Y.210 Hydrogen bonds: A:T.20, A:W.21, A:W.21, A:D.44, A:D.44, A:Y.49, A:S.160, A:N.161, A:Q.184, A:S.211, A:L.213, A:S.215, A:D.217, A:D.217, A:K.263, A:S.264, A:V.265, A:T.266, A:N.273, A:N.273 Water bridges: A:A.246, A:K.263, A:R.269, A:R.269, A:R.269 Salt bridges: A:K.22, A:K.263, A:R.269 pi-Cation interactions: A:R.269

2 x XXQ: (8-oxo-7-{[5-(trifluoromethyl)-1,3-benzothiazol-2-yl]methyl}-7,8-dihydropyrazino[2,3-d]pyridazin-5-yl)acetic acid(Non-covalent)

XXQ.2: 18 residues within 4Å: Chain A: W.21, V.48, Y.49, W.80, H.111, W.112, T.114, F.116, F.123, W.220, C.299, A.300, L.301, C.304, Y.310, P.311 Ligands: NAP.1, XXQ.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.21, A:W.112, A:F.116, A:L.301 Hydrogen bonds: A:L.301 Salt bridges: A:H.111 pi-Stacking: A:W.112, A:W.112, A:W.112 XXQ.3: 13 residues within 4Å: Chain A: F.123, L.125, G.129, N.130, V.131, W.220, V.298, C.299, A.300, L.301, L.302, S.303 Ligands: XXQ.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.123, A:L.125, A:V.131, A:W.220, A:L.301 Hydrogen bonds: A:A.300, A:L.301 Water bridges: A:K.222, A:L.302 Salt bridges: A:K.222 pi-Stacking: A:W.220, A:W.220, A:W.220

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 11 residues within 4Å: Chain A: S.3, R.4, P.14, I.15, L.16, G.39, Y.40, R.41, H.42, F.274, F.277 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.3, A:I.15, A:L.16, A:G.39, A:R.41, A:H.42 EDO.5: 6 residues within 4Å: Chain A: K.12, P.14, E.71, L.73, F.74, D.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.12 Water bridges: A:K.12, A:D.106 EDO.6: 7 residues within 4Å: Chain A: H.47, T.82, Y.83, G.119, K.120, E.121, F.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.82, A:Y.83 Water bridges: A:T.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arenas, R. et al., Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And Two AT-001. To Be Published

Release Date

2023-12-20

Peptides

Aldo-keto reductase family 1 member B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member B1

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