SMTL ID : 8fj9.1 (1 other biounit)

Structure of the catalytic domain of Streptococcus mutans GtfB in tetragonal space group P4322

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.215, D.221, N.265, D.743 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.215, A:E.215, A:N.265, A:D.743, H2O.1

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: I.189, L.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.190, A:R.192 EDO.3: 5 residues within 4Å: Chain A: D.47, Y.182, E.752, K.781, S.828 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.47, A:K.781, A:S.828 EDO.4: 5 residues within 4Å: Chain A: G.340, N.342, N.483, Q.485, E.490 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.483, A:Q.485

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: V.822, K.823, K.830, Y.831 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.831, A:Y.831 Salt bridges: A:K.830 SO4.6: 2 residues within 4Å: Chain A: R.482, N.538 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.538 Water bridges: A:N.538 Salt bridges: A:R.482 SO4.7: 1 residues within 4Å: Chain A: R.840 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.149, A:R.840 SO4.8: 1 residues within 4Å: Chain A: R.809 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.809 Salt bridges: A:R.809 SO4.9: 3 residues within 4Å: Chain A: P.749, E.750, K.751 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.751, A:K.751 Salt bridges: A:K.751 SO4.10: 3 residues within 4Å: Chain A: A.414, T.415, E.416 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.415, A:E.416 SO4.11: 2 residues within 4Å: Chain A: H.285, K.286 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.285, A:K.286 SO4.12: 6 residues within 4Å: Chain A: L.217, L.218, D.261, D.693, Y.700, Q.744 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.744 Water bridges: A:D.693, A:D.693 SO4.13: 3 residues within 4Å: Chain A: T.555, D.556, N.557 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.555, A:D.556, A:N.557, A:N.557 SO4.14: 1 residues within 4Å: Chain A: R.91 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.91 SO4.15: 3 residues within 4Å: Chain A: G.451, Q.452, H.456 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.452 Salt bridges: A:H.456 SO4.16: 2 residues within 4Å: Chain A: K.282, H.294 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.256, A:H.294 Salt bridges: A:K.282, A:H.294 SO4.17: 2 residues within 4Å: Chain A: R.380, K.384 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.380, A:K.384 SO4.18: 3 residues within 4Å: Chain A: R.615, V.616, S.637 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.615

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.19: 2 residues within 4Å: Chain A: N.356, A.357 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis. Acta Crystallogr.,Sect.F (2023)

Release Date

2023-05-17

Peptides

Glucosyltransferase-I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucosyltransferase-I

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