- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 22 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.21: 24 residues within 4Å:- Chain P: N.255, K.256, D.258, L.259, H.282, A.283, P.319, N.320, V.321, G.322, K.323, S.324, S.325, V.338, A.339, P.340, I.341, A.342, G.343, E.344, T.345, G.364
- Ligands: MG.22, K.23
24 PLIP interactions:24 interactions with chain P- Hydrogen bonds: P:N.255, P:K.256, P:K.256, P:H.282, P:A.283, P:N.320, P:V.321, P:G.322, P:K.323, P:S.324, P:S.324, P:S.324, P:S.325, P:S.325, P:A.339, P:P.340, P:G.343, P:E.344, P:T.345, P:G.364
- Salt bridges: P:D.258, P:K.323, P:K.323
- pi-Cation interactions: P:K.256
- 2 x K: POTASSIUM ION(Non-covalent)
K.23: 4 residues within 4Å:- Chain P: N.320, A.339, I.341
- Ligands: GTP.21
2 PLIP interactions:2 interactions with chain P- Metal complexes: P:A.339, P:I.341
K.25: 5 residues within 4Å:- Chain 2: N.178, Q.196, Y.198, T.201
- Ligands: GDP.24
2 PLIP interactions:2 interactions with chain 2- Metal complexes: 2:Q.196, 2:Y.198
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.24: 18 residues within 4Å:- Chain 2: N.178, V.179, G.180, K.181, S.182, S.183, V.195, Q.196, P.197, N.289, K.290, D.292, V.293, S.321, T.322, L.323
- Ligands: K.25, MG.26
17 PLIP interactions:17 interactions with chain 2- Hydrogen bonds: 2:N.178, 2:V.179, 2:G.180, 2:K.181, 2:S.182, 2:S.183, 2:Q.196, 2:N.289, 2:K.290, 2:K.290, 2:S.321, 2:T.322, 2:T.322, 2:L.323
- Salt bridges: 2:K.181, 2:D.292
- pi-Cation interactions: 2:K.290
- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vanden Broeck, A. et al., Principles of human pre-60 S biogenesis. Science (2023)
- Release Date
- 2023-07-12
- Peptides
- 60S ribosomal protein L12: A
60S ribosomal protein L11: D
60S ribosomal protein L13a: E
60S ribosomal protein L14: F
60S ribosomal protein L18: G
60S ribosomal protein L18a: H
60S ribosomal protein L21: I
60S ribosomal protein L23: J
60S ribosomal protein L28: K
60S ribosomal protein L3: L
60S ribosomal protein L32: M
60S ribosomal protein L35a: N
Guanine nucleotide-binding protein-like 3: O
Nucleolar GTP-binding protein 2: P
Ribosome production factor 2 homolog: Q
Ribosome biogenesis protein NSA2 homolog: R
Notchless protein homolog 1: S
Protein LLP homolog: T
Coiled-coil domain-containing protein 86: U
60S ribosomal protein L4: V
60S ribosomal protein L5: W
60S ribosomal protein L6: X
60S ribosomal protein L7: Y
60S ribosomal protein L9: Z
Eukaryotic translation initiation factor 6: 0
mRNA turnover protein 4 homolog: 1
GTP-binding protein 4: 2
Ribosome biogenesis regulatory protein homolog: 3
Probable ribosome biogenesis protein RLP24: 4 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BAD
L5E
L7F
L8G
LBH
LCI
LEJ
LGK
LLL
LNM
LQN
LTO
NBP
NCQ
NDR
NFS
NJT
NKU
NZV
SAW
SBX
SCY
SDZ
SG0
SK1
SQ2
SR3
ST4
SV
SMTL ID : 8fl0.1
Human nucleolar pre-60S ribosomal subunit (State H)
60S ribosomal protein L12
60S ribosomal protein L11
60S ribosomal protein L13a
60S ribosomal protein L14
60S ribosomal protein L18
60S ribosomal protein L18a
60S ribosomal protein L21
60S ribosomal protein L23
60S ribosomal protein L28
60S ribosomal protein L3
60S ribosomal protein L32
60S ribosomal protein L35a
Guanine nucleotide-binding protein-like 3
Nucleolar GTP-binding protein 2
Ribosome production factor 2 homolog
Ribosome biogenesis protein NSA2 homolog
Notchless protein homolog 1
Protein LLP homolog
Coiled-coil domain-containing protein 86
60S ribosomal protein L4
60S ribosomal protein L5
60S ribosomal protein L6
60S ribosomal protein L7
60S ribosomal protein L9
Eukaryotic translation initiation factor 6
mRNA turnover protein 4 homolog
GTP-binding protein 4
Ribosome biogenesis regulatory protein homolog
Probable ribosome biogenesis protein RLP24
Related Entries With Identical Sequence
3j7o.1 | 3j7p.8 | 3j7p.20 | 3j7p.22 | 3j7p.31 | 3j7p.32 | 3j7q.1 | 3j7r.8 | 3j7r.19 | 3j7r.21 | 3j7r.30 | 3j7r.31 | 3j92.1 | 4d5y.1 | 4d67.1 | 4v5z.20 | 4v5z.21 | 4v5z.25 | 4v5z.27 | 4v5z.41 | 4xxb.1 | 5a8l.1 | 5aj0.2 | 5aj0.3 | 5aj0.4 | 5aj0.5 | 5aj0.6 | 5aj0.8 | 5aj0.10 | 5aj0.13 more...less...5aj0.15 | 5aj0.17 | 5aj0.19 | 5aj0.20 | 5aj0.22 | 5aj0.31 | 5aj0.32 | 5aj0.43 | 5aj0.44 | 5lks.2 | 5lks.3 | 5lks.4 | 5lks.5 | 5lks.6 | 5lks.8 | 5lks.10 | 5lks.12 | 5lks.14 | 5lks.16 | 5lks.18 | 5lks.19 | 5lks.21 | 5lks.30 | 5lks.31 | 5lks.42 | 5lzu.10 | 5lzu.19 | 5lzu.21 | 5lzu.30 | 5lzu.44 | 5lzv.10 | 5lzv.19 | 5lzv.21 | 5lzv.30 | 5lzv.44 | 5lzx.10 | 5lzx.19 | 5lzx.21 | 5lzx.30 | 5lzx.44 | 5lzy.10 | 5lzy.19 | 5lzy.21 | 5lzy.30 | 5lzy.44 | 5lzz.10 | 5lzz.19 | 5lzz.21 | 5lzz.30 | 5lzz.44 | 6d90.10 | 6d90.19 | 6d90.21 | 6d90.30 | 6d9j.10 | 6d9j.19 | 6d9j.21 | 6d9j.30 | 6hcf.50 | 6hcf.52 | 6hcf.61 | 6hcf.75 | 6hcf.76 | 6hcj.43 | 6hcj.52 | 6hcj.54 | 6hcj.62 | 6hcj.76 | 6hcm.50 | 6hcm.52 | 6hcm.75 | 6hcm.76 | 6lqm.1 | 6lsr.1 | 6lss.1 | 6lu8.1 | 6mtb.10 | 6p5j.43 | 6p5j.52 | 6p5j.54 | 6p5j.63 | 6p5k.10 | 6p5k.19 | 6p5k.21 | 6p5k.30 | 6sgc.43 | 6sgc.52 | 6sgc.54 | 6sgc.63 | 6sgc.77 | 6t59.1 | 6w6l.1 | 6y0g.2 | 6y0g.3 | 6y0g.4 | 6y0g.5 | 6y0g.6 | 6y0g.8 | 6y0g.10 | 6y0g.12 | 6y0g.14 | 6y0g.16 | 6y0g.18 | 6y0g.19 | 6y0g.21 | 6y0g.30 | 6y0g.31 | 6y0g.42 | 6y2l.2 | 6y2l.3 | 6y2l.4 | 6y2l.5 | 6y2l.6 | 6y2l.8 | 6y2l.10 | 6y2l.12 | 6y2l.14 | 6y2l.16 | 6y2l.18 | 6y2l.19 | 6y2l.21 | 6y2l.30 | 6y2l.31 | 6y2l.42 | 6y57.2 | 6y57.3 | 6y57.4 | 6y57.5 | 6y57.6 | 6y57.8 | 6y57.10 | 6y57.12 | 6y57.14 | 6y57.16 | 6y57.18 | 6y57.19 | 6y57.21 | 6y57.30 | 6y57.31 | 6y57.42 | 6z6l.2 | 6z6l.3 | 6z6l.4 | 6z6l.5 | 6z6l.6 | 6z6l.8 | 6z6l.10 | 6z6l.12 | 6z6l.14 | 6z6l.16 | 6z6l.18 | 6z6l.19 | 6z6l.21 | 6z6l.30 | 6z6l.31 | 6z6l.42 | 6z6m.2 | 6z6m.3 | 6z6m.4 | 6z6m.5 | 6z6m.6 | 6z6m.8 | 6z6m.10 | 6z6m.12 | 6z6m.14 | 6z6m.16 | 6z6m.18 | 6z6m.19 | 6z6m.21 | 6z6m.30 | 6z6m.31 | 6z6m.42 | 6z6n.2 | 6z6n.3 | 6z6n.4 | 6z6n.5 | 6z6n.6 | 6z6n.8 | 6z6n.10 | 6z6n.12 | 6z6n.14 | 6z6n.16 | 6z6n.18 | 6z6n.19 | 6z6n.21 | 6z6n.30 | 6z6n.31 | 6z6n.42 | 6zm7.2 | 6zm7.3 | 6zm7.4 | 6zm7.5 | 6zm7.6 | 6zm7.8 | 6zm7.10 | 6zm7.12 | 6zm7.14 | 6zm7.16 | 6zm7.18 | 6zm7.19 | 6zm7.21 | 6zm7.30 | 6zm7.31 | 6zm7.42 | 6zm7.44 | 6zme.2 | 6zme.3 | 6zme.4 | 6zme.5 | 6zme.6 | 6zme.8 | 6zme.10 | 6zme.12 | 6zme.14 | 6zme.16 | 6zme.18 | 6zme.19 | 6zme.21 | 6zme.30 | 6zme.31 | 6zme.42 | 6zme.44 | 6zmi.2 | 6zmi.3 | 6zmi.4 | 6zmi.5 | 6zmi.6 | 6zmi.8 | 6zmi.10 | 6zmi.12 | 6zmi.14 | 6zmi.16 | 6zmi.18 | 6zmi.19 | 6zmi.21 | 6zmi.30 | 6zmi.31 | 6zmi.42 | 6zmi.44 | 6zmo.2 | 6zmo.3 | 6zmo.4 | 6zmo.5 | 6zmo.6 | 6zmo.8 | 6zmo.10 | 6zmo.12 | 6zmo.14 | 6zmo.16 | 6zmo.18 | 6zmo.19 | 6zmo.21 | 6zmo.30 | 6zmo.31 | 6zmo.42 | 6zmo.44 | 7bhp.1 | 7cpu.12 | 7cpu.23 | 7cpu.32 | 7cpv.10 | 7cpv.21 | 7cpv.30 | 7f5s.1 | 7ls1.5 | 7ls1.21 | 7ls1.30 | 7ls2.5 | 7ls2.21 | 7ls2.30 | 7mdz.10 | 7mdz.19 | 7mdz.21 | 7mdz.30 | 7nfx.1 | 7o7y.44 | 7o7y.54 | 7o7y.56 | 7o7y.65 | 7o7y.78 | 7o7z.44 | 7o7z.54 | 7o7z.56 | 7o7z.65 | 7o7z.78 | 7o80.44 | 7o80.54 | 7o80.56 | 7o80.65 | 7o80.78 | 7o81.45 | 7o81.55 | 7o81.57 | 7o81.66 | 7o81.79 | 7obr.1 | 7ow7.1 | 7oyd.26 | 7oyd.44 | 7oyd.48 | 7qvp.2 | 7qvp.3 | 7qvp.4 | 7qvp.5 | 7qvp.6 | 7qvp.8 | 7qvp.10 | 7qvp.12 | 7qvp.14 | 7qvp.16 | 7qvp.18 | 7qvp.19 | 7qvp.21 | 7qvp.30 | 7qvp.31 | 7qvp.42 | 7qvp.44 | 7qvp.45 | 7qvp.46 | 7qvp.47 | 7qvp.48 | 7qvp.50 | 7qvp.52 | 7qvp.54 | 7qvp.56 | 7qvp.58 | 7qvp.60 | 7qvp.61 | 7qvp.63 | 7qvp.72 | 7qvp.73 | 7qvp.84 | 7qwq.1 | 7qwr.1 | 7qws.1 | 7tm3.1 | 7tut.1 | 7vb2.1 | 7xnx.2 | 7xnx.3 | 7xnx.4 | 7xnx.5 | 7xnx.6 | 7xnx.8 | 7xnx.10 | 7xnx.12 | 7xnx.14 | 7xnx.16 | 7xnx.18 | 7xnx.19 | 7xnx.21 | 7xnx.30 | 7xnx.31 | 7xnx.42 | 7xny.2 | 7xny.3 | 7xny.4 | 7xny.5 | 7xny.6 | 7xny.8 | 7xny.10 | 7xny.12 | 7xny.14 | 7xny.16 | 7xny.18 | 7xny.19 | 7xny.21 | 7xny.30 | 7xny.31 | 7xny.42 | 7zjw.12 | 7zjw.21 | 7zjw.23 | 7zjw.32 | 7zjx.11 | 7zjx.20 | 7zjx.22 | 7zjx.31 | 8a3d.1 | 8bgu.1 | 8bpo.1 | 8btk.10 | 8btk.20 | 8btk.22 | 8btk.31 | 8btk.44 | 8fkp.1 | 8fkq.1 | 8fkr.1 | 8fks.1 | 8fkt.1 | 8fku.1 | 8fkv.1 | 8fkw.1 | 8fkx.1 | 8fky.1 | 8fkz.1 | 8fl2.1 | 8fl2.3 | 8fl2.5 | 8fl2.6 | 8fl2.9 | 8fl2.10 | 8fl2.12 | 8fl2.14 | 8fl2.19 | 8fl2.20 | 8fl2.23 | 8fl2.26 | 8fl2.32 | 8fl2.33 | 8fl2.34 | 8fl2.35 | 8fl2.36 | 8fl2.45 | 8fl2.46 | 8fl2.47 | 8fl2.48 | 8fl2.49 | 8fl2.52 | 8fl2.55 | 8fl2.58 | 8fl2.59 | 8fl2.60 | 8fl3.1 | 8fl3.3 | 8fl3.5 | 8fl3.6 | 8fl3.9 | 8fl3.10 | 8fl3.12 | 8fl3.14 | 8fl3.19 | 8fl3.20 | 8fl3.23 | 8fl3.26 | 8fl3.32 | 8fl3.33 | 8fl3.34 | 8fl3.35 | 8fl3.36 | 8fl3.45 | 8fl3.46 | 8fl3.47 | 8fl3.48 | 8fl3.49 | 8fl3.52 | 8fl3.55 | 8fl3.57 | 8fl3.58 | 8fl3.59 | 8fl4.1 | 8fl6.1 | 8fl7.1 | 8fl9.1 | 8fla.1 | 8flb.1 | 8flc.1 | 8fld.1 | 8fle.1 | 8flf.1 | 8g5y.36 | 8g5y.37 | 8g5y.38 | 8g5y.39 | 8g5y.40 | 8g5y.42 | 8g5y.44 | 8g5y.45 | 8g5y.49 | 8g5y.50 | 8g5y.52 | 8g5y.53 | 8g5y.60 | 8g5y.63 | 8g5y.66 | 8g5y.67 | 8g5z.46 | 8g5z.54 | 8g60.36 | 8g60.37 | 8g60.38 | 8g60.39 | 8g60.40 | 8g60.43 | 8g60.44 | 8g60.46 | 8g60.47 | 8g60.51 | 8g60.52 | 8g60.54 | 8g60.55 | 8g60.62 | 8g60.65 | 8g60.68 | 8g60.69 | 8g61.36 | 8g61.37 | 8g61.38 | 8g61.39 | 8g61.40 | 8g61.42 | 8g61.44 | 8g61.45 | 8g61.49 | 8g61.50 | 8g61.52 | 8g61.53 | 8g61.60 | 8g61.63 | 8g61.66 | 8g61.67 | 8g6j.36 | 8g6j.37 | 8g6j.38 | 8g6j.39 | 8g6j.40 | 8g6j.43 | 8g6j.44 | 8g6j.46 | 8g6j.47 | 8g6j.51 | 8g6j.52 | 8g6j.54 | 8g6j.55 | 8g6j.62 | 8g6j.65 | 8g6j.68 | 8g6j.69 | 8glp.35 | 8glp.36 | 8glp.37 | 8glp.38 | 8glp.39 | 8glp.41 | 8glp.43 | 8glp.44 | 8glp.48 | 8glp.49 | 8glp.51 | 8glp.52 | 8glp.59 | 8glp.62 | 8glp.65 | 8glp.66 | 8idt.1 | 8idy.1 | 8ie3.1 | 8ifd.2 | 8ifd.3 | 8ifd.4 | 8ifd.5 | 8ifd.6 | 8ifd.8 | 8ifd.10 | 8ifd.12 | 8ifd.14 | 8ifd.16 | 8ifd.18 | 8ifd.19 | 8ifd.21 | 8ifd.30 | 8ifd.31 | 8ifd.42 | 8ife.2 | 8ife.3 | 8ife.4 | 8ife.5 | 8ife.6 | 8ife.8 | 8ife.10 | 8ife.12 | 8ife.14 | 8ife.16 | 8ife.18 | 8ife.19 | 8ife.21 | 8ife.30 | 8ife.31 | 8ife.42 | 8ine.1 | 8inf.1 | 8ink.1 | 8ipd.1 | 8ipx.1 | 8ipy.1 | 8ir1.1 | 8ir3.1 | 8jdj.2 | 8jdj.3 | 8jdj.4 | 8jdj.5 | 8jdj.6 | 8jdj.8 | 8jdj.10 | 8jdj.12 | 8jdj.14 | 8jdj.16 | 8jdj.18 | 8jdj.19 | 8jdj.21 | 8jdj.30 | 8jdj.31 | 8jdj.42 | 8jdk.2 | 8jdk.3 | 8jdk.4 | 8jdk.5 | 8jdk.6 | 8jdk.8 | 8jdk.10 | 8jdk.12 | 8jdk.14 | 8jdk.16 | 8jdk.18 | 8jdk.19 | 8jdk.21 | 8jdk.30 | 8jdk.31 | 8jdk.42 | 8jdl.2 | 8jdl.3 | 8jdl.4 | 8jdl.5 | 8jdl.6 | 8jdl.8 | 8jdl.10 | 8jdl.12 | 8jdl.14 | 8jdl.16 | 8jdl.18 | 8jdl.19 | 8jdl.21 | 8jdl.30 | 8jdl.31 | 8jdl.42 | 8jdm.2 | 8jdm.3 | 8jdm.4 | 8jdm.5 | 8jdm.6 | 8jdm.8 | 8jdm.10 | 8jdm.12 | 8jdm.14 | 8jdm.16 | 8jdm.18 | 8jdm.19 | 8jdm.21 | 8jdm.30 | 8jdm.31 | 8jdm.42 | 8k2c.2 | 8k2c.3 | 8k2c.4 | 8k2c.5 | 8k2c.6 | 8k2c.8 | 8k2c.10 | 8k2c.12 | 8k2c.14 | 8k2c.16 | 8k2c.18 | 8k2c.19 | 8k2c.21 | 8k2c.30 | 8k2c.31 | 8k2c.42 | 8k2c.44 | 8ohd.1 | 8oj0.1 | 8oj5.1 | 8oj8.1 | 8p2k.10 | 8p2k.20 | 8p2k.22 | 8p2k.31 | 8p2k.44 | 8q7z.22 | 8q87.22 | 8qfd.1 | 8qoi.6 | 8qoi.8 | 8qoi.10 | 8qoi.12 | 8qoi.14 | 8qoi.16 | 8qoi.18 | 8qoi.19 | 8qoi.21 | 8qoi.30 | 8qoi.31 | 8qoi.42 | 8rjb.1 | 8rjc.1 | 8rjd.1 | 8scb.10 | 8scb.19 | 8scb.21 | 8scb.30 | 8scb.44 | 8xsx.2 | 8xsx.3 | 8xsx.4 | 8xsx.5 | 8xsx.6 | 8xsx.8 | 8xsx.10 | 8xsx.11 | 8xsx.13 | 8xsx.15 | 8xsx.17 | 8xsx.19 | 8xsx.20 | 8xsx.22 | 8xsx.31 | 8xsx.32 | 8xsx.43 | 8xsy.2 | 8xsy.3 | 8xsy.4 | 8xsy.5 | 8xsy.6 | 8xsy.8 | 8xsy.10 | 8xsy.12 | 8xsy.14 | 8xsy.16 | 8xsy.18 | 8xsy.19 | 8xsy.21 | 8xsy.30 | 8xsy.31 | 8xsy.42 | 8xsy.44 | 8xsz.2 | 8xsz.3 | 8xsz.4 | 8xsz.5 | 8xsz.6 | 8xsz.8 | 8xsz.10 | 8xsz.12 | 8xsz.14 | 8xsz.16 | 8xsz.18 | 8xsz.19 | 8xsz.21 | 8xsz.30 | 8xsz.31 | 8xsz.42 | 8xsz.44 | 8y0x.2 | 8y0x.3 | 8y0x.4 | 8y0x.5 | 8y0x.6 | 8y0x.8 | 8y0x.10 | 8y0x.12 | 8y0x.14 | 8y0x.16 | 8y0x.18 | 8y0x.19 | 8y0x.21 | 8y0x.30 | 8y0x.31 | 8y0x.42 | 8yoo.2 | 8yoo.3 | 8yoo.4 | 8yoo.5 | 8yoo.6 | 8yoo.8 | 8yoo.10 | 8yoo.12 | 8yoo.14 | 8yoo.16 | 8yoo.18 | 8yoo.19 | 8yoo.21 | 8yoo.30 | 8yoo.31 | 8yoo.42 | 8yoo.44 | 8yop.2 | 8yop.3 | 8yop.4 | 8yop.5 | 8yop.6 | 8yop.8 | 8yop.10 | 8yop.12 | 8yop.14 | 8yop.16 | 8yop.18 | 8yop.19 | 8yop.21 | 8yop.30 | 8yop.31 | 8yop.42 | 8yop.44 | 9f1b.21 | 9f1b.23 | 9f1b.28 | 9f1b.35 | 9f1b.60 | 9f1c.6 | 9f1c.38 | 9f1c.41 | 9f1c.82 | 9f1c.84 | 9f1d.1 | 9f1d.3 | 9f1d.9 | 9f1d.42 | 9f1d.45 | 9fpz.1 | 9fq0.1 | 9gmo.1