SMTL ID : 8fr2.1

Carbonic Anhydrase IX-mimic in complex with the alkyl urea compound 3h

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.91, H.93, E.103, H.116, T.195 Ligands: N8A.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.116

1 x N8A: 4-hydroxy-3-({[2-(pyridin-2-yl)ethyl]carbamoyl}amino)benzene-1-sulfonamide(Non-covalent)

N8A.2: 17 residues within 4Å: Chain A: W.2, F.17, H.61, Q.89, H.91, H.93, H.116, V.118, V.139, S.193, L.194, T.195, T.196, P.197, P.198, W.205 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.118, A:V.118, A:L.194, A:L.194 Hydrogen bonds: A:T.195, A:T.195, A:T.196, A:T.196, A:P.197 Water bridges: A:Q.64, A:Q.89, A:Q.89, A:Q.89

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Y.4, P.10, D.239, W.241, P.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.4, A:W.241 GOL.4: 3 residues within 4Å: Chain A: H.1, H.7, N.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.7 Water bridges: A:N.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Combs, J. et al., New Insights into Conformationally Restricted Carbonic Anhydrase Inhibitors. Molecules (2023)

Release Date

2023-02-01

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonic anhydrase 2

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