SMTL ID : 8fta.1

Crystal Structure of the second bromodomain of human Polybromo-1 (PB1) in complex with compound 16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x Y8X: (2S)-5-chloro-2-(3-methylphenyl)-2,3-dihydroquinazolin-4(1H)-one

Y8X.1: 15 residues within 4Å: Chain A: L.32, F.33, K.35, L.36, P.37, Y.42, Y.45, I.53, D.54, L.80, N.83, A.84, Y.87, N.88, V.94 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.37, A:Y.42, A:D.54, A:L.80, A:Y.87, A:V.94 Hydrogen bonds: A:N.88 Water bridges: A:L.32, A:L.36 Halogen bonds: A:L.80

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.115, E.116 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.115, A:E.116 ZN.3: 1 residues within 4Å: Chain A: H.114 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.114, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nunez, R. et al., Crystal Structure of the second bromodomain of human Polybromo-1 (PB1) in complex with compound 16. To Be Published

Release Date

2024-01-24

Peptides

Protein polybromo-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein polybromo-1

Related Entries With Identical Sequence