SMTL ID : 8ftm.1 (1 other biounit)

Setx-ssRNA-ADP-SO4 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: L.233, N.234, Q.237, G.258, T.259, G.260, K.261, T.262, K.263, R.320, Y.554, R.555 Ligands: SO4.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.234, A:Q.237, A:Q.237, A:G.258, A:T.259, A:G.260, A:K.261, A:T.262, A:T.262, A:T.262, A:K.263, A:K.263, A:R.320 Salt bridges: A:K.261, A:R.320 pi-Stacking: A:Y.554, A:Y.554 pi-Cation interactions: A:K.263, A:K.263

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: P.256, P.257, K.261, Q.516, R.555, G.682, R.716 Ligands: ADP.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.258, A:Q.516, A:Q.516, A:G.682 Salt bridges: A:K.261, A:R.555, A:R.716 SO4.3: 5 residues within 4Å: Chain A: P.235, G.236, R.239, D.551, M.552 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.236, A:Q.574 Salt bridges: A:R.239 SO4.4: 4 residues within 4Å: Chain A: R.74, S.523, Q.524, S.525 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.524, A:S.525, A:S.525 Salt bridges: A:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appel, C.D. et al., Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell (2023)

Release Date

2023-10-25

Peptides

5'-3' RNA helicase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5'-3' RNA helicase-like protein

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