SMTL ID : 8ftm.2 (1 other biounit)

Setx-ssRNA-ADP-SO4 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.257, K.261, Q.516, R.555, Q.681, G.682, R.716 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.258, A:Q.516, A:Q.516, A:G.682 Salt bridges: A:K.261, A:R.555, A:R.716 SO4.2: 5 residues within 4Å: Chain A: P.235, G.236, R.239, D.551, M.552 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.236 Salt bridges: A:R.239 SO4.3: 7 residues within 4Å: Chain A: G.258, T.259, G.260, K.261, T.262, R.555 Ligands: SO4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.258, A:T.259, A:G.260, A:K.261, A:T.262, A:T.262, A:R.555 Salt bridges: A:K.261 SO4.4: 2 residues within 4Å: Chain A: R.583, R.718 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.583, A:R.718 SO4.5: 5 residues within 4Å: Chain A: L.277, T.327, N.329, T.331, H.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.329, A:T.331 Salt bridges: A:H.333 SO4.6: 7 residues within 4Å: Chain A: Q.254, K.515, Q.540, L.549, F.568, Y.569, E.570 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.254, A:Q.540 Salt bridges: A:K.515

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appel, C.D. et al., Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell (2023)

Release Date

2023-10-25

Peptides

5'-3' RNA helicase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

5'-3' RNA helicase-like protein

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