SMTL ID : 8fwa.1 (1 other biounit)

Phycocyanin structure from a modular droplet injector for serial femtosecond crystallography

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-6-6-mer

Ligands

18 x CYC: PHYCOCYANOBILIN(Non-covalent)

CYC.1: 25 residues within 4Å: Chain A: V.59, T.66, S.72, Q.73, Y.74, A.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.118, F.122, L.124, W.128, Y.129 Chain H: R.57, I.67, Y.74, T.75, N.76, M.79 Ligand excluded by PLIP CYC.2: 18 residues within 4Å: Chain B: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, T.122, S.126 Ligand excluded by PLIP CYC.3: 17 residues within 4Å: Chain A: R.33, Q.145 Chain B: N.35, K.36, L.38, D.39, A.142, N.143, D.144, I.148, T.149, P.150, G.151, C.153 Chain K: N.21, L.24, D.28 Ligand excluded by PLIP CYC.5: 25 residues within 4Å: Chain C: V.59, T.66, S.72, Q.73, Y.74, A.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.118, F.122, L.124, W.128, Y.129 Chain L: R.57, I.67, Y.74, T.75, N.76, M.79 Ligand excluded by PLIP CYC.6: 18 residues within 4Å: Chain D: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, T.122, S.126 Ligand excluded by PLIP CYC.7: 17 residues within 4Å: Chain C: R.33, Q.145 Chain D: N.35, K.36, L.38, D.39, A.142, N.143, D.144, I.148, T.149, P.150, G.151, C.153 Chain I: N.21, L.24, D.28 Ligand excluded by PLIP CYC.9: 25 residues within 4Å: Chain E: V.59, T.66, S.72, Q.73, Y.74, A.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.118, F.122, L.124, W.128, Y.129 Chain J: R.57, I.67, Y.74, T.75, N.76, M.79 Ligand excluded by PLIP CYC.10: 18 residues within 4Å: Chain F: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, T.122, S.126 Ligand excluded by PLIP CYC.11: 17 residues within 4Å: Chain E: R.33, Q.145 Chain F: N.35, K.36, L.38, D.39, A.142, N.143, D.144, I.148, T.149, P.150, G.151, C.153 Chain G: N.21, L.24, D.28 Ligand excluded by PLIP CYC.13: 25 residues within 4Å: Chain B: R.57, I.67, Y.74, T.75, N.76, M.79 Chain G: V.59, T.66, S.72, Q.73, Y.74, A.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.14: 18 residues within 4Å: Chain H: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, T.122, S.126 Ligand excluded by PLIP CYC.15: 17 residues within 4Å: Chain E: N.21, L.24, D.28 Chain G: R.33, Q.145 Chain H: N.35, K.36, L.38, D.39, A.142, N.143, D.144, I.148, T.149, P.150, G.151, C.153 Ligand excluded by PLIP CYC.17: 25 residues within 4Å: Chain F: R.57, I.67, Y.74, T.75, N.76, M.79 Chain I: V.59, T.66, S.72, Q.73, Y.74, A.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.18: 18 residues within 4Å: Chain J: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, T.122, S.126 Ligand excluded by PLIP CYC.19: 17 residues within 4Å: Chain C: N.21, L.24, D.28 Chain I: R.33, Q.145 Chain J: N.35, K.36, L.38, D.39, A.142, N.143, D.144, I.148, T.149, P.150, G.151, C.153 Ligand excluded by PLIP CYC.21: 25 residues within 4Å: Chain D: R.57, I.67, Y.74, T.75, N.76, M.79 Chain K: V.59, T.66, S.72, Q.73, Y.74, A.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, Y.110, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.22: 18 residues within 4Å: Chain L: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, T.116, Y.117, L.120, T.122, S.126 Ligand excluded by PLIP CYC.23: 17 residues within 4Å: Chain A: N.21, L.24, D.28 Chain K: R.33, Q.145 Chain L: N.35, K.36, L.38, D.39, A.142, N.143, D.144, I.148, T.149, P.150, G.151, C.153 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain B: L.2, A.99, D.101, S.103, V.104 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.101, B:V.104 NA.8: 5 residues within 4Å: Chain D: L.2, A.99, D.101, S.103, V.104 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.103, D:V.104 NA.12: 5 residues within 4Å: Chain F: L.2, A.99, D.101, S.103, V.104 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:L.2, F:V.104 NA.16: 5 residues within 4Å: Chain H: L.2, A.99, D.101, S.103, V.104 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:D.101, H:S.103, H:V.104 NA.20: 5 residues within 4Å: Chain J: L.2, A.99, D.101, S.103, V.104 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:D.101, J:D.101, J:V.104 NA.24: 5 residues within 4Å: Chain L: L.2, A.99, D.101, S.103, V.104 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:D.101, L:S.103, L:V.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Doppler, D. et al., Modular droplet injector for sample conservation providing new structural insight for the conformational heterogeneity in the disease-associated NQO1 enzyme. Lab Chip (2023)

Release Date

2023-06-28

Peptides

C-phycocyanin alpha chain: ACEGIK
C-phycocyanin beta chain: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

C-phycocyanin alpha chain

C-phycocyanin beta chain

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