SMTL ID : 8fxx.1

Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (septameric ring)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-mer

Ligands

21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 5 residues within 4Å: Chain A: N.35 Chain B: H.162, K.164, D.165, Y.167 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: N.104, S.134 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain A: N.65 Ligand excluded by PLIP NAG.4: 5 residues within 4Å: Chain B: N.35 Chain D: H.162, K.164, D.165, Y.167 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain B: H.102, N.104, S.134 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain B: N.65 Ligand excluded by PLIP NAG.7: 5 residues within 4Å: Chain D: N.35 Chain F: H.162, K.164, D.165, Y.167 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain D: N.104, S.134 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain D: N.65 Ligand excluded by PLIP NAG.10: 5 residues within 4Å: Chain F: N.35 Chain I: H.162, K.164, D.165, Y.167 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain F: H.102, N.104, S.134 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain F: N.65 Ligand excluded by PLIP NAG.13: 5 residues within 4Å: Chain I: N.35 Chain K: H.162, K.164, D.165, Y.167 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain I: H.102, N.104, S.134 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain I: N.65 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain K: N.35 Chain M: H.162, K.164, D.165, Y.167 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain K: H.102, N.104, S.134 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain K: N.65 Ligand excluded by PLIP NAG.19: 5 residues within 4Å: Chain A: H.162, K.164, D.165, Y.167 Chain M: N.35 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain M: N.104, S.134 Ligand excluded by PLIP NAG.21: 1 residues within 4Å: Chain M: N.65 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elliott, J.I. et al., Structure basis of poxvirus mediated sabotage of T-cell costimulation. To Be Published

Release Date

2025-02-05

Peptides

CPXV040 protein: ABDFIKM
T-lymphocyte activation antigen CD86: CEGHJLN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

F
F

I
I

K
K

M
M

C
C

E
E

G
G

H
H

J
J

L
L

N
N

CPXV040 protein

T-lymphocyte activation antigen CD86

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