SMTL ID : 8fxy.1

Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (hexameric ring)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 7 residues within 4Å: Chain A: N.35 Chain C: H.162, P.163, K.164, D.165, K.166, Y.167 Ligand excluded by PLIP NAG.2: 4 residues within 4Å: Chain A: H.102, N.104, K.132, S.134 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain A: V.56, N.65, T.67 Ligand excluded by PLIP NAG.4: 7 residues within 4Å: Chain C: N.35 Chain E: H.162, P.163, K.164, D.165, K.166, Y.167 Ligand excluded by PLIP NAG.5: 4 residues within 4Å: Chain C: H.102, N.104, K.132, S.134 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain C: N.54, V.56, N.65 Ligand excluded by PLIP NAG.7: 7 residues within 4Å: Chain E: N.35 Chain G: H.162, P.163, K.164, D.165, K.166, Y.167 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain E: H.102, N.104, K.132, S.134 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain E: N.54, V.56, N.65 Ligand excluded by PLIP NAG.10: 7 residues within 4Å: Chain G: N.35 Chain I: H.162, P.163, K.164, D.165, K.166, Y.167 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain G: N.104, K.132, S.134 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain G: V.56, N.65, T.67 Ligand excluded by PLIP NAG.13: 7 residues within 4Å: Chain I: N.35 Chain K: H.162, P.163, K.164, D.165, K.166, Y.167 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain I: H.102, N.104, K.132, S.134 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain I: N.54, V.56, N.65 Ligand excluded by PLIP NAG.16: 7 residues within 4Å: Chain A: H.162, P.163, K.164, D.165, K.166, Y.167 Chain K: N.35 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain K: N.104, K.132, S.134 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain K: N.54, V.56, N.65 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elliott, J.I. et al., Structure basis of poxvirus mediated sabotage of T-cell costimulation. To Be Published

Release Date

2025-02-05

Peptides

CPXV040 protein: ACEGIK
T-lymphocyte activation antigen CD86: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
D

G
F

I
I

K
K

B
H

D
C

F
E

H
G

J
J

L
L

CPXV040 protein

T-lymphocyte activation antigen CD86

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