SMTL ID : 8g0l.1

Semi-synthetic CoA-alpha-Synuclein Constructs Trap N-terminal Acetyltransferase NatB for Binding Mechanism Studies

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MET- ASP- VAL- PHE- MET: Alpha-synuclein(Non-covalent)

MET-ASP-VAL-PHE-MET.1: 11 residues within 4Å: Chain A: L.23, T.24, E.25, Y.27, H.73, T.75, F.111, Y.137, Y.138, S.139 Ligands: CMC.2 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.137 Hydrogen bonds: A:Y.27, A:T.75, A:Y.137, A:Y.137 Salt bridges: A:H.73 pi-Cation interactions: B:K.535

1 x CMC: CARBOXYMETHYL COENZYME *A(Non-covalent)

CMC.2: 15 residues within 4Å: Chain A: V.74, T.75, L.77, S.78, V.79, R.84, R.85, L.86, G.87, L.88, A.89, F.111, V.112, N.116 Ligands: MET-ASP-VAL-PHE-MET.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.79, A:R.84 Hydrogen bonds: A:R.85, A:L.86, A:G.87, A:L.88, A:A.89, A:N.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, B. et al., Semi-synthetic CoA-alpha-Synuclein Constructs Trap N-terminal Acetyltransferase NatB for Binding Mechanism Studies. Biorxiv (2023)

Release Date

2023-05-03

Peptides

N-alpha-acetyltransferase 20: A
N-alpha-acetyltransferase 25, NatB auxiliary subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-alpha-acetyltransferase 20

N-alpha-acetyltransferase 25, NatB auxiliary subunit

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