SMTL ID : 8g2f.1

Crystal Structure of PRMT3 with Compound II710

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x DVS: 5'-S-[3-(N'-benzylcarbamimidamido)propyl]-5'-thioadenosine(Non-covalent)

DVS.1: 22 residues within 4Å: Chain A: G.34, I.38, H.39, E.41, M.42, G.72, D.94, Q.95, S.96, I.98, G.120, K.121, I.122, E.123, E.138, W.139, M.140, Y.142, M.149, S.152, H.288, W.289 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.38 Hydrogen bonds: A:H.39, A:Q.95, A:S.96, A:I.122, A:E.123, A:E.138, A:S.152 Salt bridges: A:E.138 pi-Stacking: A:H.288 DVS.2: 22 residues within 4Å: Chain B: G.34, I.38, H.39, E.41, M.42, G.72, D.94, Q.95, S.96, I.98, G.120, K.121, I.122, E.123, E.138, W.139, M.140, Y.142, M.149, S.152, H.288, W.289 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.38 Hydrogen bonds: B:H.39, B:Q.95, B:S.96, B:I.122, B:E.123, B:E.138, B:S.152 Salt bridges: B:E.138 pi-Stacking: B:H.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, Y. et al., A unique binding pocket induced by a noncanonical SAH mimic to develop potent and selective PRMT inhibitors. Acta Pharm Sin B (2023)

Release Date

2023-05-10

Peptides

Protein arginine N-methyltransferase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 3

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