SMTL ID : 8sio.1 (1 other biounit)

Crystal structure of PRMT3 with YD1-66

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x GXF: 5'-S-{3-[N'-(4'-chloro[1,1'-biphenyl]-3-yl)carbamimidamido]propyl}-5'-thioadenosine

GXF.1: 22 residues within 4Å: Chain A: G.37, I.38, H.39, E.41, M.42, G.72, D.94, Q.95, S.96, I.98, G.120, K.121, I.122, E.123, E.138, W.139, M.140, Y.142, M.149, S.152, H.288, W.289 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.38, A:E.41 Hydrogen bonds: A:H.39, A:Q.95, A:Q.95, A:I.122, A:E.123, A:E.138, A:M.140, A:S.152, A:H.288 Salt bridges: A:E.138 pi-Stacking: A:Y.142, A:H.288 GXF.2: 22 residues within 4Å: Chain B: G.37, I.38, H.39, E.41, M.42, G.72, D.94, Q.95, S.96, I.98, G.120, K.121, I.122, E.123, E.138, W.139, M.140, Y.142, M.149, S.152, H.288, W.289 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.38, B:E.41 Hydrogen bonds: B:H.39, B:Q.95, B:Q.95, B:I.122, B:E.123, B:E.138, B:M.140, B:S.152, B:H.288 Salt bridges: B:E.138 pi-Stacking: B:Y.142, B:H.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, X. et al., Crystal structure of PRMT3 with YD1-66. To be published

Release Date

2024-04-17

Peptides

Protein arginine N-methyltransferase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 3

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