SMTL ID : 8g6a.1 (1 other biounit)

Wildtype PTP1b in complex with DES6016

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x ZD3: {(2S)-4-[6-methyl-2-(trifluoromethyl)quinolin-4-yl]piperazin-2-yl}methanol(Non-covalent)

ZD3.1: 9 residues within 4Å: Chain A: A.189, L.192, N.193, L.195, F.196, R.199, L.232, F.280, I.281 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.196, A:F.196, A:F.196, A:F.280 Hydrogen bonds: A:A.189, A:N.193 Water bridges: A:N.193

1 x ZD5: {(2R)-4-[6-methyl-2-(trifluoromethyl)quinolin-4-yl]piperazin-2-yl}methanol(Non-covalent)

ZD5.2: 8 residues within 4Å: Chain A: D.11, W.16, V.184, P.185, E.186, A.264, D.265, R.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.184 pi-Cation interactions: A:R.268 Halogen bonds: A:D.265

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 8 residues within 4Å: Chain A: Y.46, D.48, V.49, A.217, G.220, R.221, Q.262, Q.266 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.48, A:G.220 Water bridges: A:A.217, A:R.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Greisman, J.B. et al., Discovery and Validation of the Binding Poses of Allosteric Fragment Hits to Protein Tyrosine Phosphatase 1b: From Molecular Dynamics Simulations to X-ray Crystallography. J.Chem.Inf.Model. (2023)

Release Date

2023-04-26

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1

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