SMTL ID : 8g7y.1

Cryo-EM Structure of full length Neuroligin-2 from mouse with Neurexin-1 beta

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.83, R.94, V.138, N.140 No protein-ligand interaction detected (PLIP) NAG.2: 1 residues within 4Å: Chain A: N.547 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.547 NAG.3: 5 residues within 4Å: Chain B: F.83, R.94, N.140, T.142, T.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.94, B:N.140 NAG.4: 1 residues within 4Å: Chain B: N.547 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain C: S.204, N.207, Y.221 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.207

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain C: D.160, V.177, G.178, I.229, N.231 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.160, C:D.160, C:V.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyd, R. et al., Cryo-EM structure of full length mouse Neuroligin-2 with a singe Neurexin-1 Beta at 3.92 angstroms. To Be Published

Release Date

2025-05-14

Peptides

Neuroligin-2: AB
Neurexin-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Neuroligin-2

Neurexin-1

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