SMTL ID : 8g7z.1

Cryo-EM structure of full length Neuroligin-2 from Mouse bound to two Neurexin-1 Beta conformation one

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.94, N.140 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.94 NAG.2: 6 residues within 4Å: Chain A: Q.513, A.514, E.515, P.545, C.546, N.547 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.545, A:N.547 NAG.3: 2 residues within 4Å: Chain B: V.138, N.140 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.140 NAG.4: 1 residues within 4Å: Chain B: N.547 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.547 NAG.6: 4 residues within 4Å: Chain C: S.204, G.205, N.207, Y.221 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.207 NAG.8: 5 residues within 4Å: Chain D: S.204, G.205, N.207, Y.221, T.228 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:T.228 Hydrogen bonds: D:N.207

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 4 residues within 4Å: Chain C: D.160, V.177, I.229, N.231 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.160, C:D.160, C:V.177, C:I.229 CA.7: 4 residues within 4Å: Chain D: D.160, V.177, I.229, N.231 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.160, D:V.177, D:I.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyd, R. et al., Cryo-EM structure of full length mouse Neuroligin-2 at 3.28 Angstroms resolution. To Be Published

Release Date

2025-05-14

Peptides

Neuroligin-2: AB
Neurexin-1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Neuroligin-2

Neurexin-1

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