SMTL ID : 8gat.1 (2 other biounits)

Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), based on consensus cryo-EM map with only Fab 1G01 resolved

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.197 Chain C: S.53 Chain D: Y.450, G.451, T.452 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain A: N.143, N.144, W.434 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain A: N.364 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.83, N.231 Ligand excluded by PLIP NAG.5: 5 residues within 4Å: Chain D: N.197 Chain F: S.53 Chain G: Y.450, G.451, T.452 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain D: N.143, N.144, W.434 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Chain D: N.364 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain D: N.83, N.231 Ligand excluded by PLIP NAG.9: 5 residues within 4Å: Chain G: N.197 Chain I: S.53 Chain J: Y.450, G.451, T.452 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain G: N.143, N.144, W.434 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain G: N.364 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain G: N.83, N.231 Ligand excluded by PLIP NAG.13: 5 residues within 4Å: Chain A: Y.450, G.451, T.452 Chain J: N.197 Chain L: S.53 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain J: N.143, N.144, W.434 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain J: N.364 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain J: N.83, N.231 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lederhofer, J. et al., Protective human monoclonal antibodies target conserved sites of vulnerability on the underside of influenza virus neuraminidase. Immunity (2024)

Release Date

2024-02-28

Peptides

Vasodilator-stimulated phosphoprotein, Neuraminidase chimera: ADGJ
Fab 1G01, heavy chain: BEHK
Fab 1G01, light chain: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

B
M

E
M

H
M

K
M

C
N

F
N

I
N

L
N

Vasodilator-stimulated phosphoprotein, Neuraminidase chimera

Fab 1G01, heavy chain

Fab 1G01, light chain

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