SMTL ID : 8gbq.1

Structure of RNF125 in complex with UbcH5b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain B: D.10, C.11, A.12, H.28, V.29, F.30, Y.48 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.10, B:A.12, B:V.29, B:V.29

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.11, C.14, C.31, C.34 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.11, B:C.14, B:C.31, B:C.34 ZN.3: 4 residues within 4Å: Chain B: C.26, H.28, C.46, C.49 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.26, B:H.28, B:C.46, B:C.49 ZN.4: 4 residues within 4Å: Chain B: C.74, C.77, H.89, C.93 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.74, B:C.77, B:H.89, B:C.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Middleton, A.J. et al., Zinc finger 1 of the RING E3 ligase, RNF125, interacts with the E2 to enhance ubiquitylation. Structure (2023)

Release Date

2023-07-19

Peptides

Ubiquitin-conjugating enzyme E2 D2: A
E3 ubiquitin-protein ligase RNF125: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 D2

E3 ubiquitin-protein ligase RNF125

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