SMTL ID : 5ulf.2 (1 other biounit)

Crystal Structure of a UbcH5b~Ub conjugate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-oligomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: P.70, K.71, V.72, S.88, I.89, L.94, R.95 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.70, A:V.72, A:I.89, A:R.95, A:R.95 GOL.2: 4 residues within 4Å: Chain A: L.15, L.18, R.27, A.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.26, A:A.28 GOL.3: 2 residues within 4Å: Chain A: K.149, Y.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Middleton, A.J. et al., Discovery of new non-covalent ubiquitin binding sites on UbcH5. To be published

Release Date

2017-06-07

Peptides

Ubiquitin-conjugating enzyme E2 D2: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin-conjugating enzyme E2 D2

Ubiquitin

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