SMTL ID : 8gbu.2 (2 other biounits)

Hepatitis B capsid Y132A mutant with compound AB-506

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x YWE: (1-methyl-1H-1,2,4-triazol-3-yl)methyl {(1S)-4-[(3-chloro-4-fluorophenyl)carbamoyl]-7-fluoro-2,3-dihydro-1H-inden-1-yl}carbamate(Non-covalent)

YWE.1: 12 residues within 4Å: Chain A: F.26, P.28, D.32, L.33, T.36, W.105, I.108, S.109, Y.121, I.142, L.143, S.144 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.28, A:I.108, A:L.143 Hydrogen bonds: A:L.143, A:S.144 Halogen bonds: A:D.32

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: A.38, A.39, L.40, Y.41, R.42, D.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.40, A:R.42, A:D.43 EDO.3: 2 residues within 4Å: Chain A: H.50 Chain B: R.115 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.115 EDO.4: 1 residues within 4Å: Chain B: H.50 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:H.50, A:R.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cole, A.G. et al., Design, synthesis, and structure-activity relationship of a bicyclic HBV capsid assembly modulator chemotype leading to the identification of clinical candidate AB-506. Bioorg.Med.Chem.Lett. (2023)

Release Date

2023-09-06

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Capsid protein

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